DRSC/TRiP Functional Genomics Resources

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Protein Alignment fabp and fabp1b.2

DIOPT Version :9

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:XP_002663094.2 Gene:fabp1b.2 / 100330224 ZFINID:ZDB-GENE-100318-6 Length:128 Species:Danio rerio


Alignment Length:117 Identity:39/117 - (33%)
Similarity:60/117 - (51%) Gaps:7/117 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFK 65
            |.|.| |::|:|.|.::|:|..:|...:.:| .|......|:...|:.|.|||.|..|....||.
Zfish     1 MPFSG-KFELEKYEGWEEFMTAIGHQELLKK-ANDGKTQFEIQENGNDYCLTTRSGGKVLNNSFT 63

  Fly    66 LGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFTDNE--LITL 115
            :|.:.:.:.|.|..||:::..||.|| :...|:  .|:..|..|..  ||||
Zfish    64 IGQDTEIQMLSGDKVKTVVHKDGQKL-KAALGN--ITLTWELLDENTLLITL 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 Lipocalin 7..>107 CDD:278490 30/99 (30%)
fabp1b.2XP_002663094.2 Lipocalin 3..128 CDD:304412 38/115 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11955
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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