DRSC/TRiP Functional Genomics Resources

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Protein Alignment fabp and XB5907626

DIOPT Version :9

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:XP_002938785.1 Gene:XB5907626 / 100145027 XenbaseID:XB-GENE-5907627 Length:126 Species:Xenopus tropicalis


Alignment Length:123 Identity:34/123 - (27%)
Similarity:66/123 - (53%) Gaps:18/123 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFK 65
            |||.| .:::...||::.::|::|:.....|:...::|.:|:...||.:.:|:.:..::.:.||.
 Frog     1 MSFAG-TWQVYSQENYENFLKQVGLPDEIIKVAKDINPIIEIQQNGDNFVVTSKTPKQSQSNSFT 64

  Fly    66 LGVEFDEETLDGRNVKSIITLDGNKL---------TQEQKGDK--------PTTIVRE 106
            :|.|.:..|:.|:..|.|:.|:|.||         .||.:||:        |||:.|:
 Frog    65 IGKESEITTVGGKKAKVIVNLEGGKLICKSDTFSHIQEIQGDEMVETITIGPTTLKRK 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 Lipocalin 7..>107 CDD:278490 30/117 (26%)
XB5907626XP_002938785.1 lipocalin_FABP 3..125 CDD:385686 32/121 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11955
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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