DRSC/TRiP Functional Genomics Resources

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Protein Alignment sea and Rim2

DIOPT Version :10

Sequence 1:NP_001027175.1 Gene:sea / 3772221 FlyBaseID:FBgn0037912 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_608615.1 Gene:Rim2 / 33350 FlyBaseID:FBgn0031359 Length:365 Species:Drosophila melanogaster


Alignment Length:189 Identity:48/189 - (25%)
Similarity:85/189 - (44%) Gaps:24/189 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 IVAGGITGGIEICITYPTEYVKTQLQLDEKGAAKKYNG-----IFDCVKKTVGERGFLGLYRGLS 96
            |::....|.:....|.|..:|||::|||       ||.     :..|:::...:.|....|:|::
  Fly   171 IMSAASAGFVSSTATNPIWFVKTRMQLD-------YNSKVQMTVRQCIERVYAQGGVAAFYKGIT 228

  Fly    97 VLVYGSIPKSAARFGAFEFLKSNAVDSRGQ----LSNSGKLLCGLGAGVCEAIVA---VTPMETI 154
            ...:| |.::...|..:||:||..::.|.|    ...|...|..:.||.....:|   ..|.|..
  Fly   229 ASYFG-ICETMVHFVIYEFIKSKLLEQRNQRHTDTKGSRDFLEFMMAGAVSKTIASCIAYPHEVA 292

  Fly   155 KVKFINDQRSGNPKFRGFAHGVGQIIKSEGISGIYKGLTPTILKQGSNQAIRFFVLESL 213
            :.:.   :..|| |:..|...:..:.|.||.:|:|:||...:::|..|.||.....|::
  Fly   293 RTRL---REEGN-KYNSFWQTLHTVWKEEGRAGLYRGLATQLVRQIPNTAIMMATYEAV 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seaNP_001027175.1 Mito_carr 34..117 CDD:395101 21/84 (25%)
Mito_carr 125..220 CDD:395101 24/96 (25%)
Mito_carr 235..314 CDD:395101
Rim2NP_608615.1 Mito_carr 8..156 CDD:395101
Mito_carr 163..253 CDD:395101 23/89 (26%)
Mito_carr 268..355 CDD:395101 22/84 (26%)
Blue background indicates that the domain is not in the aligned region.

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