DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10096 and MS2

DIOPT Version :9

Sequence 1:NP_001027183.1 Gene:CG10096 / 3772183 FlyBaseID:FBgn0038032 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_187805.1 Gene:MS2 / 820372 AraportID:AT3G11980 Length:616 Species:Arabidopsis thaliana


Alignment Length:518 Identity:137/518 - (26%)
Similarity:227/518 - (43%) Gaps:101/518 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SFYKDKTVFLTGGSGFLGKVTIAKLL-CTTEVKRIYVLLRAKRGQEMRERCAAWDKDPV-----F 65
            ||.:.|...:||.:|||.||.|.|:| ...:|.:||:|::||..:...||.    |:.|     |
plant   126 SFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERL----KNEVLDAELF 186

  Fly    66 GNLMKTNPEA-----LKRVVPCGGDCQEPDLGLSNSDRQVLIDEVQIVIHTAATVRFVEPLHIAL 125
            ..|.:|:..:     |.:::|..|:..:.::||.....:.:..||.::|::||...|.|...:||
plant   187 NTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVAL 251

  Fly   126 AVNTRATRLMIQLAKEMSHLESFVHVSTAYSN----------------CVVEHVSERFYPEHLTC 174
            .:|||....::..||:...|:.|:.|||||.|                |:   .:|.|...:   
plant   252 DINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCI---ATENFLEGN--- 310

  Fly   175 PAEKILEL-------LESI-----SPELLDKMAPALMGK-----YPNTYTYTKALTEQVIQKEAK 222
              .|.|::       ||:.     :.:...||....:.:     :.:||.:|||:.|.:|.....
plant   311 --RKALDVDREMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQDTYVFTKAMGEMMINSTRG 373

  Fly   223 DLPLSIFRPGVIIASYKEPMPGWID--NLYGPIAVLYGAAFGILHITLLNLKAQAGIVPVDYCVN 285
            |:|:.|.||.||.::||:|.|||::  .:..||.:.||.  |.|...|::.|....:||.|..||
plant   374 DVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGK--GQLTGFLVDPKGVLDVVPADMVVN 436

  Fly   286 MVLTCAWNTARDTSIKLSPEPPI--YNFTPNNDNLITWGGFRDKAARLRYTYPLTKMMWLPFLHC 348
            ..|..   .|:.......|||.|  |....:..|.:.   |.| .|.|.|.:..|.    |.:..
plant   437 ATLAA---IAKHGMAMSDPEPEINVYQIASSAINPLV---FED-LAELLYNHYKTS----PCMDS 490

  Fly   349 TTIPWLFRFTAIFYHLLPGYAIDLALRLW-----------GKKPRMIKLYDKI----HKNID--- 395
            ...|.:.|...:|     ....|.:..||           |......|:..|:    .|:::   
plant   491 KGDPIMVRLMKLF-----NSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQKLKFICKKSVEQAK 550

  Fly   396 ----ILAPFVITSWSFDTVNTRKLWAKMSVEDQKLYDFNMSSVDWDDYFLQA-LAGVRIYLAK 453
                |..|:......||..||::|...||.::::.:.|::.|::|.||.... :.|:|.::.|
plant   551 HLATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYITNVHIPGLRRHVLK 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10096NP_001027183.1 PLN02996 1..441 CDD:215538 134/503 (27%)
FAR-N_SDR_e 12..330 CDD:187547 103/365 (28%)
Sterile 363..453 CDD:281068 23/112 (21%)
MS2NP_187805.1 PLN02503 1..616 CDD:215279 137/518 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.960

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