DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and SART3

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:XP_005269298.1 Gene:SART3 / 9733 HGNCID:16860 Length:981 Species:Homo sapiens


Alignment Length:324 Identity:70/324 - (21%)
Similarity:128/324 - (39%) Gaps:69/324 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 DTEFSFPSSSSRRGYNDFPGCGGSGGNGGSANNLGGGNMCHL----PPMASNNSLNNLCGLSLGS 102
            |.|...| |..||..|..|..|.:.....:|   |....|..    ||........:|      .
Human   653 DDEEEQP-SKRRRVENSIPAAGETQNVEVAA---GPAGKCAAVDVEPPSKQKEKAASL------K 707

  Fly   103 GGSDDLMNDPRASNTNLIVNYLPQDM--TDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDF 165
            .....:::|....:..:.|:.||..|  .|.:|..||.|.|.:...|.:...:..:. ||.:|:|
Human   708 RDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFR-GYCYVEF 771

  Fly   166 TSEMDSQRAI----KVLNGITV---------RNKRLKV-SYARPGGESIKDTNLYVTNLPRTITD 216
            ..|..:.:|:    |.:.|..:         :|...|| .|:    .|::...|:::.||.:.|.
Human   772 KEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYS----TSLEKHKLFISGLPFSCTK 832

  Fly   217 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN------NVIPEGGSQP 275
            ::|:.|...:|::....::.:: .|:|:|:|:|.|....:|.:|:..::      |:|....|.|
Human   833 EELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNP 896

  Fly   276 LSVRLAEE-------------------HGKAKAAHFMSQMGVVPANVPPP---PPQPPAHMAAA 317
            ...::.|:                   .||.:     :|:.::|..:..|   .||.....|||
Human   897 PQRKVPEKPETRKAPGGPMLLPQTYGARGKGR-----TQLSLLPRALQRPSAAAPQAENGPAAA 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 23/95 (24%)
RRM2_Hu_like 203..281 CDD:240822 19/83 (23%)
SART3XP_005269298.1 RNA14 100..>478 CDD:227438
NRDE-2 351..>504 CDD:285605
RRM 654..876 CDD:223796 53/237 (22%)
RRM1_SART3 723..796 CDD:240837 19/73 (26%)
RRM2_SART3 817..897 CDD:240838 18/80 (23%)
LSM_int_assoc 895..951 CDD:293211 9/60 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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