DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Sxl and PAB1

DIOPT Version :9

Sequence 1:	NP_001259303.1	Gene:	Sxl / 3772180	FlyBaseID:	FBgn0264270	Length:	722	Species:	Drosophila melanogaster
Sequence 2:	NP_174676.2	Gene:	PAB1 / 840313	AraportID:	AT1G34140	Length:	407	Species:	Arabidopsis thaliana

Alignment Length:	154	Identity:	52/154 - (33%)
Similarity:	81/154 - (52%)	Gaps:	5/154 - (3%)

- Green bases have known domain annotations that are detailed below.

  Fly   118 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGIT 182
            |:.|..|.:.:.:::|..:|.|.|.:.:|::.|| .:|.|.||.||.|.|::....|....||..
plant    32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFHNGTL 95

  Fly   183 VRNKRLKVSYARPGGESIKD---TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR 244
            :||:.:.|......|:..|.   ||:||.||..|.||..|..:||::|.|....:::|. .|:.|
plant    96 IRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSR 159

  Fly   245 GVAFVRYNKREEAQEAISALNNVI 268
            ...||.:.|.|.|..||..:|.|:
plant   160 RFGFVNFEKAEAAVTAIEKMNGVV 183

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Sxl	NP_001259303.1	RRM1_SXL	117..197	CDD:241093	24/78 (31%)
Sxl	NP_001259303.1	RRM2_Hu_like	203..281	CDD:240822	26/66 (39%)
PAB1	NP_174676.2	RRM_SF	<1..23	CDD:302621
		RRM2_I_PABPs	29..105	CDD:240825	24/73 (33%)
		ELAV_HUD_SF	30..296	CDD:273741	52/154 (34%)
		RRM3_I_PABPs	118..197	CDD:240826	26/67 (39%)
		RRM4_I_PABPs	222..299	CDD:240827
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000313
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.910