DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and AT1G03457

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_973752.1 Gene:AT1G03457 / 839497 AraportID:AT1G03457 Length:438 Species:Arabidopsis thaliana


Alignment Length:466 Identity:105/466 - (22%)
Similarity:180/466 - (38%) Gaps:134/466 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 DDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 170
            :.:.|:.|   ..|.|..:|:.||:.:|..|||....:|...|:::..|....|..|:...:..|
plant     4 ETMENEER---VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRED 65

  Fly   171 SQRAIKVLNGITVRNKR--------LKVSYARPGGE----SIKDTN------LYVTNLPRTITDD 217
               |.||:|  :..||:        |:|.||  .||    .:.|.:      |:|..||:.:::.
plant    66 ---ADKVIN--SFHNKKTLPGASSPLQVKYA--DGELERLDVLDCSCNPEHKLFVGMLPKNVSET 123

  Fly   218 QLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN-NVIPEGGSQPLSVRLA 281
            ::.::|.:||:|....|||..|. ..:|..|::|..:|:|..|:.||| ..|.||.:.||.|:.|
plant   124 EVQSLFSEYGTIKDLQILRGSLQ-TSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWA 187

  Fly   282 EEHGKAKAAHFM--------------SQMGVVPANVPPP----------------PPQPPAHMAA 316
            :...:.:|...:              |..|.:|.:..||                ||....|  |
plant   188 DTEKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYGYMLPPIQTQH--A 250

  Fly   317 AFNMM---HRDGAMEKLRSLFDAICDAIFGLDSENFADLLDGLYRRKYH-------YPYLXLTPQ 371
            ..|::   ..:|...:..:|.:::...:  ....||...| |.|  .||       :|...:.|:
plant   251 FHNVISPNQGNGRALQGTALTESVPPRL--APRRNFPTAL-GNY--GYHGLQYPMAFPRGMIPPR 310

  Fly   372 QQQQLLQHQQQALGFTSSSNNSIGNGNGNDN----------NMLLYH--QQYHQQQTQQ--QRLG 422
                        |..|:.|.....||....:          |:.:|:  :::..|:...  |..|
plant   311 ------------LPLTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFG 363

  Fly   423 NVAAHNI------------------SPNGSNNNINTSNTNNINFNTIRQNGVAALHYLQEQLQLQ 469
            .|.:..:                  |...:.|.|||.|...::...::             :||:
plant   364 KVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLK-------------VQLK 415

  Fly   470 QPQDQQSQQQQ 480
            :...||.||||
plant   416 RDNGQQQQQQQ 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 25/87 (29%)
RRM2_Hu_like 203..281 CDD:240822 27/84 (32%)
AT1G03457NP_973752.1 RRM1_2_CELF1-6_like 13..89 CDD:240807 22/80 (28%)
PABP-1234 <14..346 CDD:130689 85/358 (24%)
RRM1_2_CELF1-6_like 110..185 CDD:240807 26/75 (35%)
RRM3_CELF1-6 341..413 CDD:240808 11/84 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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