DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Sxl and AT5G09880

DIOPT Version :9

Sequence 1:	NP_001259303.1	Gene:	Sxl / 3772180	FlyBaseID:	FBgn0264270	Length:	722	Species:	Drosophila melanogaster
Sequence 2:	NP_568220.1	Gene:	AT5G09880 / 830848	AraportID:	AT5G09880	Length:	527	Species:	Arabidopsis thaliana

Alignment Length:	256	Identity:	62/256 - (24%)
Similarity:	102/256 - (39%)	Gaps:	39/256 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly   106 DDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 170
            |:...||......:....:|...|:|::|..|...|.:...|::.|..:..|.|..:::|...|.
plant   157 DEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS 221

  Fly   171 SQRAIKVLNG-------ITVRNKRLKVSYARP-----GGESIKDTNLYVTNLPRTITDDQLDTIF 223
            ...|| .|:|       :.|:....:.:.|:.     ||....|..|||.||...:::.||..||
plant   222 VPMAI-ALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIF 285

  Fly   224 GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEH---- 284
            ..:|.:....:..|..||:.:|..|:::.:.|.::.|..|||..:...| :.:.|....:|
plant   286 EAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAG-RTIKVSSVSDHIGTQ 349

  Fly   285 -GKAKAAHFMSQMGVVPANVPPPPPQPPAHMAAAFNMMHRDGAMEKL-RSLFDAICDAIFG 343
             ...|:|.|....|                ...|.|...|...|:|| ||   .|..:|.|
plant   350 DSAPKSADFDDDDG----------------GGLALNAQSRAMLMQKLDRS---GIATSIVG 391

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Sxl	NP_001259303.1	RRM1_SXL	117..197	CDD:241093	18/91 (20%)
Sxl	NP_001259303.1	RRM2_Hu_like	203..281	CDD:240822	22/77 (29%)
AT5G09880	NP_568220.1	SF-CC1	85..517	CDD:273721	62/256 (24%)
		RRM1_RBM39_like	169..241	CDD:240729	16/72 (22%)
		RRM2_RBM23_RBM39	267..340	CDD:240730	21/73 (29%)
		RBM39linker	366..452	CDD:292157	11/29 (38%)
		RRM3_RBM39_like	434..517	CDD:240731
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910