DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Sxl and RBP31

DIOPT Version :9

Sequence 1:	NP_001259303.1	Gene:	Sxl / 3772180	FlyBaseID:	FBgn0264270	Length:	722	Species:	Drosophila melanogaster
Sequence 2:	NP_001328008.1	Gene:	RBP31 / 828579	AraportID:	AT4G24770	Length:	329	Species:	Arabidopsis thaliana

Alignment Length:	178	Identity:	51/178 - (28%)
Similarity:	89/178 - (50%)	Gaps:	10/178 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly   114 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 178
            :....|.|..|..|:..:.|..||...|.:....::.:.:|..|.|:.||..:|..:::.|::..
plant   147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211

  Fly   179 NGITVRNKRLKVSYARPGGESIKDT--------NLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL 235
            |...:..:.|.|:.|.|.|...:..        .:||.|||..:.:.:|:.:|.::|.:|:..::
plant   212 NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVV 276

  Fly   236 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEE 283
            .|:.|||.||..||..:..:|..||||||:....||  :.:.|.:|||
plant   277 YDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG--RAIRVNVAEE 322

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Sxl	NP_001259303.1	RRM1_SXL	117..197	CDD:241093	20/79 (25%)
Sxl	NP_001259303.1	RRM2_Hu_like	203..281	CDD:240822	27/85 (32%)
RBP31	NP_001328008.1	RRM_HP0827_like	151..228	CDD:240845	19/76 (25%)
		RRM_HP0827_like	245..321	CDD:240845	27/77 (35%)
		DNA_pol_phi	<87..145	CDD:368199
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		mtm1072
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.920