DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and RBMS2

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:XP_006719604.1 Gene:RBMS2 / 5939 HGNCID:9909 Length:477 Species:Homo sapiens


Alignment Length:361 Identity:91/361 - (25%)
Similarity:142/361 - (39%) Gaps:83/361 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI 148
            ||..||::.|:    |.||.|:|.|      |.|||.:..|....||::|..|.:..|.|.:.:.
Human    33 PPSPSNSTPNS----SSGSNGNDQL------SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKA 87

  Fly   149 MRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
            :.|..|....||.||||.|...:|:|:..|....|:.:..|.....|       ||||::|||.:
Human    88 ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDP-------TNLYISNLPLS 145

  Fly   214 ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN---VIPEG---G 272
            :.:.:|:.:...:|.::...|||| .:|..|||.|.|....|:.:..|:..|.   ..|.|   .
Human   146 MDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAP 209

  Fly   273 SQPLSVRLAE-------------EHGKAKAAHFMSQMGVVPANVPPPPPQPPAHMAAAFNMM-HR 323
            |.||..:.|:             ::|:|...:  :.|||:.....|..........|.:|:. :|
Human   210 SDPLLCKFADGGPKKRQNQGKFVQNGRAWPRN--ADMGVMALTYDPTTALQNGFYPAPYNITPNR 272

  Fly   324 DGAMEKLRSLFDAICDAIFGLDSENFADLLDGLYRR--------------KYHYPYL------XL 368
            ..|...|.....:...:                |:|              .:|:.||       |
Human   273 MLAQSALSPYLSSPVSS----------------YQRVTQTSPLQVPNPSWMHHHSYLMQPSGSVL 321

  Fly   369 TP-------QQQQQLLQHQQQALGFTSSSNNSIGNG 397
            ||       .|...::....|.||..|.|:....:|
Human   322 TPGMDHPISLQPASMMGPLTQQLGHLSLSSTVYADG 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 25/79 (32%)
RRM2_Hu_like 203..281 CDD:240822 27/83 (33%)
RBMS2XP_006719604.1 RRM1_MSSP1 49..134 CDD:240914 28/90 (31%)
RRM2_MSSP2 135..220 CDD:240918 28/85 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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