DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and RBM3

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_006734.1 Gene:RBM3 / 5935 HGNCID:9900 Length:157 Species:Homo sapiens


Alignment Length:156 Identity:36/156 - (23%)
Similarity:67/156 - (42%) Gaps:38/156 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITV 183
            |.|..|..:..::.|...|.:.|||:...:::|.:|..|.|:.|:.||:...:..|::.:||.::
Human     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72

  Fly   184 RNKRLKV----------------------SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKY 226
            ..::::|                      ||:|.||:....:..|..:.|            |.|
Human    73 DGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRP------------GGY 125

  Fly   227 GSIVQKNILRDKLTGRPRGVAFVRYN 252
            |....::  || ..||.:| .:.||:
Human   126 GYGYGRS--RD-YNGRNQG-GYDRYS 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 22/99 (22%)
RRM2_Hu_like 203..281 CDD:240822 12/50 (24%)
RBM3NP_006734.1 RRM_CIRBP_RBM3 6..85 CDD:409883 19/76 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..157 17/83 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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