DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and rbms1a

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:XP_005155779.1 Gene:rbms1a / 564994 ZFINID:ZDB-GENE-030131-4967 Length:398 Species:Danio rerio


Alignment Length:441 Identity:105/441 - (23%)
Similarity:155/441 - (35%) Gaps:109/441 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI 148
            ||..|.||..|....|..:.|.:.|      |.|||.:..||...||.:|..|.:..|.|.:.:.
Zfish    30 PPSPSTNSSTNNSSSSSSTTGWEQL------SKTNLYIRGLPPGTTDHDLVKLCQPYGKIVSTKA 88

  Fly   149 MRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 213
            :.|..|....||.||||.|.:.:|:|:..|....|:.:..|.....|       ||||::|||.:
Zfish    89 ILDKTTNKCKGYGFVDFDSPVSAQKAVAALKTNGVQAQMAKQQEQDP-------TNLYLSNLPVS 146

  Fly   214 ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE------GG 272
            :.:.:|:.:...:|.:|...|||| ..|..|||.|.|....|:....||..|....:      |.
Zfish   147 MDEQELENLLKPFGQVVSTRILRD-TNGMSRGVGFARMESTEKCDAVISHFNGKFIKSSSGMLGA 210

  Fly   273 SQPLSVRLAEEHGKAKAAHFMSQMGVVPANVPPPPPQPPAHMAAAFNMMHRDGAMEKLRSLFDAI 337
            |:||..:.|:...|.:    .||...:|..                ....||..:.         
Zfish   211 SEPLLCKFADGGQKKR----QSQAKYIPNG----------------RTWTRDAEVR--------- 246

  Fly   338 CDAIFGLD---SENFADLLDGLYRRKYHY-----------PY---LXLTPQQQQQLLQHQQQALG 385
               :.|:.   ..|.| |.:|.|...|..           ||   :...|.|....:.||...:.
Zfish   247 ---LSGMTLTYDPNTA-LQNGYYAAPYAMGNRLMTQPGVSPYISPISTYPVQNPSWMPHQPYIMQ 307

  Fly   386 FTSSSNNSIGNGNGNDNNMLLYHQQYHQQQTQ--------QQRLGNVAAHNISPNGSNNNINTSN 442
            ...:               :|.....|....|        .|::|:::.      |.......:|
Zfish   308 HPGA---------------VLSPSMEHPMSLQPSAMLAPLTQQMGHLSL------GGTATFIPAN 351

  Fly   443 TNNINFNTIRQNGVAALHYLQEQLQLQQPQDQQSQQQQPLTM--PSSPPFQ 491
            |        ...|....||...|.....|:.:...|.|.::.  |||.|||
Zfish   352 T--------AMPGAYIPHYTHIQPPAIPPEQESGVQPQDVSSSDPSSYPFQ 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 26/79 (33%)
RRM2_Hu_like 203..281 CDD:240822 28/83 (34%)
rbms1aXP_005155779.1 RRM_SF 50..135 CDD:302621 28/90 (31%)
RRM_SF 136..221 CDD:302621 29/85 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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