DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and Hrb98DE

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster


Alignment Length:565 Identity:106/565 - (18%)
Similarity:157/565 - (27%) Gaps:234/565 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 NSLNNLCGLSLGSGGSDDLMNDPRASNT------NLIVNYLPQDMTDRELYALFRAIGPINTCRI 148
            ||..|..|   .|.|.||  :.|:.|.|      .|.:..|....||..|.|.|...|.|....:
  Fly     3 NSNQNQNG---NSNGHDD--DFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVV 62

  Fly   149 MRDYKTGYSFGYAFVDFT-----SEMDSQRAIKVLNGITVRNKRLKVSYARP--------GGESI 200
            |:|.:|..|.|:.|:.::     .|....|..|: :|..|..||     |.|        .|.::
  Fly    63 MKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI-DGRVVEPKR-----AVPRQDIDSPNAGATV 121

  Fly   201 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 265
            |  .|:|..|.....:..:...|..:|:||..||:.||.||:.||.|||.::..:...:.:    
  Fly   122 K--KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV---- 180

  Fly   266 NVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANVPPPPPQPPAHMAAAFNMMHRDGAMEKL 330
                          |.::|                                     ..:|.|..:
  Fly   181 --------------LQKQH-------------------------------------QLNGKMVDV 194

  Fly   331 RSLFDAICDAIFGLDSENFADLLDGLYRRKYHYPYLXLTPQQQQQLLQHQQQALGFTSSSNNSIG 395
            :...                                   |:|..|                ...|
  Fly   195 KKAL-----------------------------------PKQNDQ----------------QGGG 208

  Fly   396 NGNGNDNNMLLYHQQYHQQQTQQQRLGNVAAHNISPNGSNNNINTSNTNNINFNTIRQNGVAALH 460
            .|.|....                |.|          |:..|:...|..|       |||     
  Fly   209 GGRGGPGG----------------RAG----------GNRGNMGGGNYGN-------QNG----- 235

  Fly   461 YLQEQLQLQQPQDQQSQQQQPLTMPSSPPFQQQSRQSHHNGSSSTLGNQLLAISNNNSFNNNSNQ 525
                                                   .|:.:..||..    .||...|::..
  Fly   236 ---------------------------------------GGNWNNGGNNW----GNNRGGNDNWG 257

  Fly   526 SNSFTGNYSNGSAFTSNGAISGSNFP-NNPTSSGNF--TNNSTNSNPTNSGHFASNLAGSSNFTN 587
            :|||.|....|..:.......|:|.| :|....|||  ..|:.|:...:.|.:..|..|...   
  Fly   258 NNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGGGPQ--- 319

  Fly   588 HLSGSNNYTNS-------NGNFTSNAASSSNFSNNAASSTNYSKN 625
              .|..|:.|:       .|.|.:...:..|:..|.....|...|
  Fly   320 --RGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNN 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 25/98 (26%)
RRM2_Hu_like 203..281 CDD:240822 18/77 (23%)
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 23/82 (28%)
RRM_SF 123..195 CDD:302621 22/126 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.920

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