Protein Alignment Sxl and sqd

DIOPT Version :9

• Sequence 1: NP_001259303.1
• Gene: Sxl / 3772180
• FlyBaseID: FBgn0264270
• Length: 722
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 199
• Identity: 54/199 - (27%)
• Similarity: 90/199 - (45%)
• Gaps: 38/199 - (19%)

  Fly    61 GCGGSGGNGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLP 125
            |.|...|:.|:|.:..|         :|:|.       |..||..||        :..|.|..|.
  Fly    24 GPGSENGDAGAAGSTNG---------SSDNQ-------SAASGQRDD--------DRKLFVGGLS 64

  Fly   126 QDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS--EMDSQRAI--KVLNGITVRNK 186
            .:.|::||...|...|.|.:..:..|.:||.|.|:||:.||:  .:|...|.  .::|...|..|
  Fly    65 WETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPK 129

  Fly   187 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 251
            :.|   ||.|       .::|..|...|:|:::.|.||::|:||:..:..||...:.:|..|:.:
  Fly   130 KAK---ARHG-------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF 184

  Fly   252 NKRE 255
            :..:
  Fly   185 DSEQ 188

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sxl	NP_001259303.1	RRM1_SXL	117..197	CDD:241093	26/83 (31%)
		RRM2_Hu_like	203..281	CDD:240822	14/53 (26%)
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	22/70 (31%)
		RRM2_hnRNPD_like	137..211	CDD:240775	14/52 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910