DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and Slirp

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_081234.2 Gene:Slirp / 380773 MGIID:1916394 Length:112 Species:Mus musculus


Alignment Length:118 Identity:29/118 - (24%)
Similarity:55/118 - (46%) Gaps:19/118 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 AIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 238
            |...:.|::.    |:.|..||        ..:|..:|.|....:|...|.::|.:.:..:..||
Mouse     2 AASAIKGLSA----LRSSTGRP--------IAFVRKIPWTAAASELREHFAQFGHVRRCTVPFDK 54

  Fly   239 LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAH 291
            .||..||:.:|:::.:||.|.|:...:::|.       .|::..:..:|||.|
Mouse    55 ETGFHRGMGWVQFSSQEELQNALQQEHHIID-------GVKIHVQAQRAKALH 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 6/22 (27%)
RRM2_Hu_like 203..281 CDD:240822 19/77 (25%)
SlirpNP_081234.2 RRM_SLIRP 21..92 CDD:240688 19/77 (25%)
RRM <22..>92 CDD:223796 19/76 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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