DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and hnrnpa1b

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_956398.1 Gene:hnrnpa1b / 378453 ZFINID:ZDB-GENE-030912-14 Length:422 Species:Danio rerio


Alignment Length:596 Identity:108/596 - (18%)
Similarity:164/596 - (27%) Gaps:251/596 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 NNSLNNLCGLS----LGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIM 149
            :.|....||::    :|....:....:|.... .|.:..|..:.||..|.|.|...|.:..|.:|
Zfish     2 HQSHRQACGVARTEIVGRMSKEGQPREPEQLR-KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVM 65

  Fly   150 RDYKTGYSFGYAFVDFTS------EMDSQRAIKVLNGITVRNKRL--KVSYARP-GGESIKDTNL 205
            :|..|..|.|:.||.::|      .||: |..|| :|..|..||.  :...::| ...::|  .:
Zfish    66 KDPNTKRSRGFGFVTYSSVDEVNASMDA-RPHKV-DGRLVEPKRAVSREDSSKPFAHTTVK--KI 126

  Fly   206 YVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 270
            :|..:.....::.|...|.::|.|....|:.|..||..||.|||.:                   
Zfish   127 FVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTF------------------- 172

  Fly   271 GGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANVPPPPPQPPAHMAAAFNMMHRDGAMEKLRSLFD 335
                       ::|                                                   
Zfish   173 -----------DDH--------------------------------------------------- 175

  Fly   336 AICDAIFGLDSENFADLLDGLYRRKYHYPYLXLTPQ----QQQQLLQHQQQALGFTSSSNNSIGN 396
                           |.:|.:..:|||      |..    :.::.|..|:.|    ::.....|.
Zfish   176 ---------------DSVDRIVIQKYH------TVNGHNCEVRKALSKQEMA----NTGRGGGGG 215

  Fly   397 GNGNDNNMLLYHQQYHQQQTQQQRLGNVAAHNISPNGSNNNINTSNTNNINFNTIRQNGVAALHY 461
            |.|...|.              .|.||        ||..||         :|             
Zfish   216 GGGGGGNF--------------NRYGN--------NGGYNN---------DF------------- 236

  Fly   462 LQEQLQLQQPQDQQSQQQQPLTMPSSPPFQQQSRQSHHNGSSSTLGNQLLAISNNNSFNNNSNQS 526
                                                   |.....||:       :.:.....:.
Zfish   237 ---------------------------------------GGGGGGGNR-------DGYFGRGGRG 255

  Fly   527 NSFTGN------------YSNGSAFTSNGAISGSNFPNNPTSSGNFTNNSTNSNPTNSGHFASNL 579
            |:|.|.            |:|.:.|...|...|..  |...|.||:..|.........||...|.
Zfish   256 NNFGGGGGGGGYGGGGDCYNNNNGFGGGGYGGGGG--NGGGSPGNYGGNRGYGGGGGGGHGYGNQ 318

  Fly   580 A---GSSNFTNHLSGSNNYTNSNGNF--------------TSNAASSSNFSNNAASSTNYS--KN 625
            .   |..|......|.|||.|.||||              :....:.::|.|..:..:||.  |.
Zfish   319 GGGYGGGNSGGGGGGYNNYNNGNGNFGGGNFGGGGGGGGNSGGGGNYNDFGNYNSQQSNYGPMKG 383

  Fly   626 CSSGVVGNSDP 636
            ...|...||.|
Zfish   384 NFGGGGRNSGP 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 27/88 (31%)
RRM2_Hu_like 203..281 CDD:240822 14/77 (18%)
hnrnpa1bNP_956398.1 RRM <19..187 CDD:223796 47/268 (18%)
RRM_SF 31..111 CDD:302621 26/82 (32%)
RRM2_hnRNPA1 124..200 CDD:241024 22/179 (12%)
HnRNPA1 367..>387 CDD:288479 5/19 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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