DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and pAbp

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster


Alignment Length:636 Identity:123/636 - (19%)
Similarity:225/636 - (35%) Gaps:155/636 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGIT 182
            :|.|..||||:.:..|:..|.:.||:.:.|:.||..|..|.|||:|:|....|::||:..:|...
  Fly     3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDL 67

  Fly   183 VRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 245
            ||||.:::.:::  |........|:::.||.|.|.:..:...|..:|:|:...:..|: .|..:|
  Fly    68 VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKG 131

  Fly   246 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANVPPPPPQP 310
            ..||.:...|.|..:|..:|.::..|             .|.....|:.:               
  Fly   132 YGFVHFETEEAANTSIDKVNGMLLNG-------------KKVYVGKFIPR--------------- 168

  Fly   311 PAHMAAAFNMMHRDGAMEKLRSLFDAICDAIFGLDSENFADLLDGLYRRKYHYPYLXLTPQQQQQ 375
                      ..|:..:.:...||..:.       .:||.:..|....:::..||. :|..:...
  Fly   169 ----------KEREKELGEKAKLFTNVY-------VKNFTEDFDDEKLKEFFEPYGKITSYKVMS 216

  Fly   376 LLQHQQQALGF-----TSSSNNSIGNGNGND--NNMLLYHQQYHQQQTQQQRLG----------- 422
            ....:.:..||     |.::..::...||.|  ....||..:..::..:||.|.           
  Fly   217 KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRH 281

  Fly   423 ------NVAAHNI-------------SPNGSNNNINTSNTNNINFNTIRQNGVAALHYLQEQLQL 468
                  |:...|:             ||.|   ||.::..........:..|....:...|....
  Fly   282 ESVFGVNLYVKNLDDTIDDDRLRIAFSPYG---NITSAKVMTDEEGRSKGFGFVCFNAASEATCA 343

  Fly   469 QQPQDQQSQQQQPLTMPSSPPFQQQSRQSHHNGSSSTLGNQLLAISNNNSFNNNSN--QSNSFTG 531
            ....:.:....:||.:..:.  :::.|::|       |.:|.:.............  |.|:.:|
  Fly   344 VTELNGRVVGSKPLYVALAQ--RKEERKAH-------LASQYMRHMTGMRMQQLGQIYQPNAASG 399

  Fly   532 NY-----SNGSAFTSNGAISGSNFPN----------------NPTSSGNFTNNSTNSNPTNSGHF 575
            .:     ||...|.|..|....|.|.                ...::|.| ..:..:.||   .|
  Fly   400 FFVPTLPSNQRFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGF-QGTAGAVPT---QF 460

  Fly   576 ASNLAGSSNFTNHLSGSNNYTNSNGNFTSNAASSSNFSNNAASSTNYSKNCS-------SGVVGN 633
            .|..||:......:.|::          :.||:::|..|..|.:....:..:       :.:.|.
  Fly   461 RSAAAGARGAQPQVQGTH----------AAAAAANNMRNTGARAITGQQTAAPNMQIPGAQIAGG 515

  Fly   634 SDPDSCSRKHTTNTNNHHTSPQHDFSFNMSTTEQELHQQTLKLQQLHLNNS 684
            :...:.:.|:|:|..|... ||             |||.....|||...||
  Fly   516 AQQRTSNYKYTSNMRNPPV-PQ-------------LHQTQPIPQQLQGKNS 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 29/80 (36%)
RRM2_Hu_like 203..281 CDD:240822 18/77 (23%)
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 123/636 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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