DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and Rbp9

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster


Alignment Length:761 Identity:191/761 - (25%)
Similarity:312/761 - (40%) Gaps:180/761 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GNNNPGSNNNNGGYPPYGYNNKSSGGRGFGMSHSLPSGMDTEFSFPSSSSRRGYNDFPGCGGSGG 67
            |.:..||...:.|.|... ||.::       |.:..:|..|  :..::::..|.......|.:..
  Fly    20 GASGVGSTTGSAGGPATA-NNVTN-------SQAQTNGGTT--ATTTAAAGAGSTTNAAVGQATA 74

  Fly    68 NGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRE 132
            |..::||....|       .:||:.||    :..:..:::...||:   ||||||||||.|:..|
  Fly    75 NNAASNNNNNNN-------NTNNNNNN----NATANNNNNNEPDPK---TNLIVNYLPQTMSQDE 125

  Fly   133 LYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG 197
            :.:||.:.|.:.:|:::||..||.|.||.||::..:.|:::||..|||:.::||.:|||.|||..
  Fly   126 IRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSS 190

  Fly   198 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 262
            ||||..||||:.||:.:|...|:::|..||.|:...||.|.:||..:||.|:|:::|.||..||.
  Fly   191 ESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIK 255

  Fly   263 ALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANVP-----PPPPQPPAHMAAAFNMMH 322
            .||...|:..::|::|:.|......|.:.......:.|.|..     |......|..|||...:|
  Fly   256 ELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAIH 320

  Fly   323 RD-GAMEKLRSLFDAI--------------------CDAIFGLDSENFADLLDGLYRRKYHYPYL 366
            .: |....:.|.:..:                    |..::.|..:...::|..|:.     |:.
  Fly   321 PNAGRYSSVISRYSPLTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENVLWQLFG-----PFG 380

  Fly   367 XLTPQQQQQLLQHQQ-QALGFTSSSNN-----SIGNGNGNDNNMLLYHQQYHQQQTQQQRL---- 421
             :...:..:.||..: :..||.:.:|.     :|.:.||......:....:...:.:|..|    
  Fly   381 AVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNKNKQTXLLTKL 445

  Fly   422 -----GNVAAHNISPNGSNNNINTSNTNNINFNTIRQNGVAALHYLQEQLQLQQPQDQQSQQQQP 481
                 .|.||..::.||                       ..||                     
  Fly   446 AAVVNANAAAAALAANG-----------------------LVLH--------------------- 466

  Fly   482 LTMPSSPPFQQQSRQSHHNGSSSTLGNQLLAISNNNSFNNNSNQSNSFTGNYSNGSAFTSNGAIS 546
                           :||:.            ||..|.|||||.||                ..|
  Fly   467 ---------------NHHHH------------SNIGSINNNSNNSN----------------GCS 488

  Fly   547 GSNFPNNPTSSGNFTNNSTNSNPTNSGHFASNL-----AGSSNFTNHLSGSNNYTNSNGNFTSNA 606
            .:.||     .|.:.|:|:|:...|..:..||.     |.:||....::......:|....|.:.
  Fly   489 AAAFP-----LGKYVNHSSNNRQHNINNSTSNTSKQKPASTSNKQQSMAPPKRLASSTAATTGDL 548

  Fly   607 ASSSNFSNNAASSTNYSKNCSSGVVGNSDPDSCSRKHTTNTNNHHTSPQHDFSFNMSTTEQELHQ 671
            |:::     |.:|::.|.:.|||..|.:...:.|...:::|||:.......|.:|....:.||.|
  Fly   549 AATA-----ATNSSSSSHSASSGDAGATGTAASSSSSSSSTNNNILKTSTKFIYNKPQNQYELLQ 608

  Fly   672 QTLKLQQLHLNNSFNNTTAAATTSAAASTSTSTTATASSTNSANVG 717
            |.|:|||.......|...:|||.|:..|        |:|||..|.|
  Fly   609 QQLQLQQEFAQFLTNVANSAATPSSNGS--------ANSTNQRNGG 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 39/79 (49%)
RRM2_Hu_like 203..281 CDD:240822 31/77 (40%)
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 101/338 (30%)
RRM1_Hu 109..186 CDD:241094 36/79 (46%)
RRM2_Hu 196..274 CDD:241096 31/77 (40%)
RRM3_Hu 355..432 CDD:240823 13/81 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 67 1.000 Domainoid score I3499
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - mtm1072
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.910

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