DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and HNRNPL

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_001372580.1 Gene:HNRNPL / 3191 HGNCID:5045 Length:626 Species:Homo sapiens


Alignment Length:607 Identity:117/607 - (19%)
Similarity:191/607 - (31%) Gaps:183/607 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GSNNNNGGYPPYGYNNKSSGGRGFGMSHSLPSGMDTEFSFPSSSSRRGYNDFPGCGGSGGNGGSA 72
            |.....|.|    |...|.|||.       |..:.|:    ::..:.|     |.||.||..|:|
Human    39 GGGGGGGRY----YGGGSEGGRA-------PKRLKTD----NAGDQHG-----GGGGGGGGAGAA 83

  Fly    73 NNLGGG----------------------------------------------------------- 78
            ...|||                                                           
Human    84 GGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVL 148

  Fly    79 NMCHLPPMASNNSL---------NNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLP--QDMTDRE 132
            ..|:....|::|.:         |......:...|..|   |.|:.|:.|:...|.  ..:|...
Human   149 GACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSD---DSRSVNSVLLFTILNPIYSITTDV 210

  Fly   133 LYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNK--RLKVSYARP 195
            ||.:....||:....|.|  |.|..   |.|:|.|...:|||...|||..:.:.  .||:.||:|
Human   211 LYTICNPCGPVQRIVIFR--KNGVQ---AMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKP 270

  Fly   196 GGESIKDTNLYVTNLPRTITDDQLDTIFGK--YGSIVQKNILRDKLTG-RP----RGVAFVRYNK 253
                   |.|.|....:...|.....:.|:  .||...|...:..|.| .|    .|..|...:.
Human   271 -------TRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGEGRGFPSVDS 328

  Fly   254 R---EEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANV------------ 303
            |   ..|:......:.|:|...|.|    ....||...:.:.....|..|.:.            
Human   329 RGSCAPARRPPCKFSPVLPLFPSHP----PGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGH 389

  Fly   304 -------------PPPPPQPPAHMAAAFNMMHRDGAMEKLRSLFDA--ICDAIFGLDSENFADLL 353
                         |||||.||.:..      |.|..:..:..|..:  .||.:|     |...|.
Human   390 RRGPSRYGPQYGHPPPPPPPPEYGP------HADSPVLMVYGLDQSKMNCDRVF-----NVFCLY 443

  Fly   354 DGLYRRKYHYPYLXLTPQQQQQLLQHQQQALGFTSSSNNSIGNGNGNDNNMLLYHQQYHQQQTQQ 418
            ..:.:.|:               ::.:..|.....:...::.....:.||..::.|:.:...::|
Human   444 GNVEKVKF---------------MKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQ 493

  Fly   419 QRLGNVAAHNISPNGSNNNINTSNTNNINFNTIRQ---NGVA----ALHYLQEQLQLQQPQDQQS 476
            ..:....::.:. :||.:..:.|.:.|..|:|..|   |.:.    .||:....|::.:....:.
Human   494 PAIMPGQSYGLE-DGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEI 557

  Fly   477 QQQQPLTMPSS-PPFQQQSRQS 497
            ..:..:..||| ..|..:|.:|
Human   558 CDELGVKRPSSVKVFSGKSERS 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 26/83 (31%)
RRM2_Hu_like 203..281 CDD:240822 19/87 (22%)
HNRNPLNP_001372580.1 hnRNP-L_PTB 100..624 CDD:273733 96/526 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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