Protein Alignment Sxl and elavl1a

DIOPT Version :9

• Sequence 1: NP_001259303.1
• Gene: Sxl / 3772180
• FlyBaseID: FBgn0264270
• Length: 722
• Species: Drosophila melanogaster
• Sequence 2: XP_005171324.1
• Gene: elavl1a / 30736
• ZFINID: ZDB-GENE-990415-245
• Length: 340
• Species: Danio rerio
• Alignment Length: 380
• Identity: 112/380 - (29%)
• Similarity: 174/380 - (45%)
• Gaps: 108/380 - (28%)

  Fly   102 SGGSDDLMNDPRA-SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDF 165
            |.|.:|.|.|... |.||||||||||:|:..||.:||.:||.:.:.:::||...|:|.||.||::
Zfish    18 SNGYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 82

  Fly   166 TSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV 230
            .:..|::|||..|||:.:::|.:|||||||..:||||.|||::.||:|:|...::.:||:||.|:
Zfish    83 LNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRII 147

  Fly   231 QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQ 295
            ...:|.|:.:|..|||||:|::||.||::||..||...|.|.::.::|:.|....:.|....:.|
Zfish   148 NSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQVIPQ 212

  Fly   296 MGVVPANVPPPPPQPPAHMAAAFNMMHRDGAMEKLRSLFDAICDAIFGLDSENFADLLDGLYRRK 360
            :
Zfish   213 V---------------------------------------------------------------- 213

  Fly   361 YHYPYLXLTPQQQQQL---LQHQQQALGFTSSSNNSIG-----NGNGNDNN---MLLYHQQYHQQ 414
            ||        ||.::.   :.||.|...|:..|.:.:.     |..||.::   :.:|:
Zfish   214 YH--------QQSRRFGGPVHHQAQRFRFSPMSVDHMSGMSGVNVPGNSSSGWCIFIYN------ 264

  Fly   415 QTQQQRLGNVAAHNI-----SPNGSNNNINTSNTNNINFNTIRQNG---VAALHY 461
                  ||..|...|     .|.|:..|:....    :|||.:..|   |...||
Zfish   265 ------LGQDADEGILWQMFGPFGAVTNVKVIR----DFNTNKCKGFGFVTMTHY 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sxl	NP_001259303.1	RRM1_SXL	117..197	CDD:241093	40/79 (51%)
		RRM2_Hu_like	203..281	CDD:240822	32/77 (42%)
elavl1a	XP_005171324.1	ELAV_HUD_SF	31..340	CDD:273741	107/367 (29%)
		RRM1_Hu	33..110	CDD:241094	36/76 (47%)
		RRM2_HuR	120..203	CDD:241217	33/82 (40%)
		RRM3_HuR	257..340	CDD:241097	15/69 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000313
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.910