DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and Elavl2

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_001289146.1 Gene:Elavl2 / 286973 RGDID:628611 Length:388 Species:Rattus norvegicus


Alignment Length:290 Identity:108/290 - (37%)
Similarity:163/290 - (56%) Gaps:37/290 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 NGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRE 132
            ||.:.||...|          ..::||.|...:.||.::|       |.||||||||||:||..|
  Rat    36 NGPTCNNTANG----------PTTVNNNCSSPVDSGNTED-------SKTNLIVNYLPQNMTQEE 83

  Fly   133 LYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG 197
            |.:||.:||.|.:|:::||..||.|.||.||::....|:::||..|||:.::.|.:|||||||..
  Rat    84 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 148

  Fly   198 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 262
            .||:|.||||:.||:|:|..:|:.:|.:||.|:...||.|::||..|||.|:|::||.||:|||.
  Rat   149 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213

  Fly   263 ALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANVPPPPPQPPAHMAAAFNMMHRDGAM 327
            .||...|.|.::|::|:.|....:......:||:...|..   ..|.|.|..|..|.:       
  Rat   214 GLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR---RYPGPLAQQAQRFRL------- 268

  Fly   328 EKLRSLFDAICDAIFGLDSENFADL-LDGL 356
                   |.:.:..:|:  :.|:.: :||:
  Rat   269 -------DNLLNMAYGV--KRFSPMTIDGM 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 43/79 (54%)
RRM2_Hu_like 203..281 CDD:240822 36/77 (47%)
Elavl2NP_001289146.1 ELAV_HUD_SF 65..387 CDD:273741 98/251 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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