DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and sup-26

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_001254892.1 Gene:sup-26 / 175551 WormBaseID:WBGene00006331 Length:476 Species:Caenorhabditis elegans


Alignment Length:412 Identity:93/412 - (22%)
Similarity:146/412 - (35%) Gaps:91/412 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 NGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRE 132
            :|...|::.|..     |..::|..    |......|.....:....|:|||.:..|..:..|..
 Worm   108 HGRVQNHMRGSG-----PFGNSNGY----GRYTAPRGDQQHHDSTPLSSTNLYIRGLMPNTNDDL 163

  Fly   133 LYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLN--GITVRNKRLKVSYARP 195
            |..:....|.|.:.:.:.|..|....||.||||.|...:..|:..||  |:..:..:|:.....|
 Worm   164 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDP 228

  Fly   196 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 260
                   ||||:.|||...|:..|:|...|:|.::...|||.. ..:.|||.|.|.:.:|:.:..
 Worm   229 -------TNLYIANLPLDFTEQMLETELNKFGMVISTRILRTP-DNQSRGVGFARMDSKEKCEVI 285

  Fly   261 ISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANVPPPPPQPPAHMAAAFNMMHRDG 325
            |||||     ||                                            .|:.|.::|
 Worm   286 ISALN-----GG--------------------------------------------RFDTMSKEG 301

  Fly   326 AMEKLRSLFDAICDAIFGLDSENFADLLDGLYRRKY---HYPYLXLTP----QQQQQLLQHQQQA 383
            ....::       .|..|..|::..:..:.|.|.:|   :..|. ..|    ||...:.....|.
 Worm   302 PALLIK-------QADTGRKSKHSMNNPEMLQRMQYPQVYQSYYGYHPAAVYQQHYDVNSLASQM 359

  Fly   384 LGFTSSSNNSIGNGNGNDNNMLLYHQQYHQQQTQQQRLGNVAAHNISPNGSNNNINTSNTNNINF 448
            .|......|...||.|:.....:|.|....|..|....|..|..: :.||.:|.......:::| 
 Worm   360 GGMHVGGGNPQANGGGDMYGAHMYGQNAGGQGGQGVGQGGQADES-TINGQDNVFTPLLLSSLN- 422

  Fly   449 NTIRQNGVAALHYLQEQLQLQQ 470
                   :.:|..|..|..||:
 Worm   423 -------LFSLSILSNQSSLQK 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 23/81 (28%)
RRM2_Hu_like 203..281 CDD:240822 28/77 (36%)
sup-26NP_001254892.1 RRM1_MSSP 148..218 CDD:240689 21/69 (30%)
RRM2_MSSP 229..310 CDD:240690 31/137 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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