DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and eif-3.G

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_001263666.1 Gene:eif-3.G / 174346 WormBaseID:WBGene00001230 Length:262 Species:Caenorhabditis elegans


Alignment Length:79 Identity:34/79 - (43%)
Similarity:50/79 - (63%) Gaps:5/79 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 RPGGESI----KDTN-LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 253
            ||.|..|    .|.| ..|||||:.:.:|:|..:|||.|.:::..|.|||:||.|:|.|||.:..
 Worm   168 RPDGRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 232

  Fly   254 REEAQEAISALNNV 267
            |::|..||:.||::
 Worm   233 RDDAARAIAELNDI 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 2/2 (100%)
RRM2_Hu_like 203..281 CDD:240822 29/66 (44%)
eif-3.GNP_001263666.1 eIF3G 33..143 CDD:240597
RRM <176..>260 CDD:223796 30/71 (42%)
RRM_eIF3G_like 183..259 CDD:240854 28/64 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 63 1.000 Domainoid score I6782
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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