Protein Alignment Sxl and pab-1

DIOPT Version :9

• Sequence 1: NP_001259303.1
• Gene: Sxl / 3772180
• FlyBaseID: FBgn0264270
• Length: 722
• Species: Drosophila melanogaster
• Sequence 2: NP_001369814.1
• Gene: pab-1 / 172920
• WormBaseID: WBGene00003902
• Length: 646
• Species: Caenorhabditis elegans
• Alignment Length: 479
• Identity: 110/479 - (22%)
• Similarity: 166/479 - (34%)
• Gaps: 140/479 - (29%)

  Fly    87 ASNNSLNNLCGLSLGSGGSDDLMN--DPRASN-----------TNLIVNYLPQDMTDRELYALFR 138
            |:.|::..:.|:.|  .|....:.  .|||..           ||:.|...........|..||.
 Worm   172 AAQNAIQKVNGMLL--AGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFA 234

  Fly   139 AIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES---- 199
            ..|.|.:|.:|.  ..|.|.|:.||.|.:..:::.|::.|:..|:....||:...|...:|
 Worm   235 KFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHA 297

  Fly   200 ----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAF 248
                            .:..||||.||..|:.||.|...|..||:|....::.|: .||.:|..|
 Worm   298 ELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGF 361

  Fly   249 VRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE--EHGKAK-AAHFMSQM------GVVPANVP 304
            |.:.|.|||..|::.:|:.:.  .|:||.|.:|:  |..:|: |:.:|.::      |.||....
 Worm   362 VCFEKPEEATSAVTEMNSKMV--CSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAM 424

  Fly   305 PPPPQP-PAHMAAAFNMMHRDGAMEKLRSLFDAICDAIFGLDSENFADLLDGLYRRKYHYPYLXL 368
            ..|.|| |.:..|
 Worm   425 YNPTQPGPGYYVA---------------------------------------------------- 437

  Fly   369 TPQQQQQLLQHQQQALGFTSSSNNSIGNGNGNDNNMLLYHQQYHQQQ---TQQQRLGNVAAHNIS 430
            .|.|||:.....||.:.         ..|.....|......||...|   ..|.|:|........
 Worm   438 NPMQQQRNFAGGQQMVR---------PGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGG 493

  Fly   431 PNGSNNNINTSNTNNINFNTIRQNGVAALHYLQ----------EQLQLQQPQDQQSQQQQPLTMP 485
            |.|...          .:|.:.|.||.    :|          :|..:.:|..||.||:...|.|
 Worm   494 PRGPPQ----------QYNQVAQGGVR----MQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGP 544

  Fly   486 SSPPFQQQSRQSHHNGSSSTLGNQ 509
            .:||...|:.|....|  ..:|.|
 Worm   545 KAPPQPYQAYQQRPQG--IVIGGQ 566

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sxl	NP_001259303.1	RRM1_SXL	117..197	CDD:241093	22/79 (28%)
		RRM2_Hu_like	203..281	CDD:240822	30/77 (39%)
pab-1	NP_001369814.1	PABP-1234	32..640	CDD:130689	110/479 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910