DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sxl and Hnrnpab

DIOPT Version :9

Sequence 1:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster
Sequence 2:NP_001041526.1 Gene:Hnrnpab / 15384 MGIID:1330294 Length:332 Species:Mus musculus


Alignment Length:237 Identity:50/237 - (21%)
Similarity:87/237 - (36%) Gaps:48/237 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 SGGNGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNT--NLIVNYLPQD 127
            |.|:||.......||.                     :|...|.:|..:....  .:.|..|..|
Mouse    42 SAGSGGGTTTAPSGNQ---------------------NGAEGDQINASKNEEDAGKMFVGGLSWD 85

  Fly   128 MTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV-------LNGITVRN 185
            .:.::|...|...|.:..|.|..|..||.|.|:.|:.|   .||....||       |:|..:..
Mouse    86 TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKVLDQKEHRLDGRVIDP 147

  Fly   186 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 250
            |:.......|    :|  .::|..|....|::::...||::|.|....:..|....:.||..|:.
Mouse   148 KKAMAMKKDP----VK--KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFIT 206

  Fly   251 YNKREEAQEAISALNNVIPEGGS-------QPLSVRLAEEHG 285
            :.:.:..::.:....:.:  .||       ||..|...:::|
Mouse   207 FKEEDPVKKVLEKKFHTV--SGSKCEIKVAQPKEVYQQQQYG 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 23/88 (26%)
RRM2_Hu_like 203..281 CDD:240822 16/84 (19%)
HnrnpabNP_001041526.1 CBFNT 1..75 CDD:285369 9/53 (17%)
RRM1_hnRNPAB 76..150 CDD:241201 22/76 (29%)
RRM2_hnRNPAB 155..234 CDD:241028 15/86 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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