DRSC/TRiP Functional Genomics Resources

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Protein Alignment primo-1 and CG14903

DIOPT Version :9

Sequence 1:NP_001027186.1 Gene:primo-1 / 3772179 FlyBaseID:FBgn0040077 Length:155 Species:Drosophila melanogaster
Sequence 2:NP_650561.1 Gene:CG14903 / 42014 FlyBaseID:FBgn0038446 Length:119 Species:Drosophila melanogaster


Alignment Length:132 Identity:28/132 - (21%)
Similarity:46/132 - (34%) Gaps:43/132 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VEVDSAAIGGWHVGNRADPRAISTLQKHGLKCTHIVRQIRKQDFSEFDYIFGMDEDNM------- 92
            |..|..:...|.:|      |:.....|   .|..|..:..:|.....|:  .|.|||       
  Fly    10 VRSDLRSALSWPLG------AVIAQSCH---ATAAVIHLNSEDADTVAYL--NDLDNMHKVVLEA 63

  Fly    93 ---SELRRLAPKGSKAELLMLGDFGLEKKNRI-IEDPYYERGAEGFETAYQQCVVACAAFMKERL 153
               |.|.:|:.|..:.|:          |::: ||.|      |...|.     :|...::|:.:
  Fly    64 KDESALVKLSEKLKENEI----------KHKLWIEQP------ENIPTC-----IALKPYVKDTV 107

  Fly   154 QK 155
            .|
  Fly   108 HK 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
primo-1NP_001027186.1 LMWPTP 3..150 CDD:319971 26/125 (21%)
CG14903NP_650561.1 PTH2_like 4..117 CDD:239107 28/132 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446180
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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