DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex6 and Nvl

DIOPT Version :10

Sequence 1:NP_001027403.2 Gene:Pex6 / 3772165 FlyBaseID:FBgn0033564 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_080447.1 Gene:Nvl / 67459 MGIID:1914709 Length:855 Species:Mus musculus


Alignment Length:585 Identity:201/585 - (34%)
Similarity:300/585 - (51%) Gaps:84/585 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 LLQGERGSGKSKLVSAVAQELGMHIYGADCAEIVSQVPSHTEMKLKAVFAKSQVCEPLMICFHNF 431
            ||.|..|.||:.|..|:|.||.:.|......||||.|...:|.||:.:|.::....|.::.....
Mouse   301 LLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEI 365

  Fly   432 EIFGIDNE-GNEDL--RLLSAFHVQVQELFNRDRKHPIVVVALTS-DRHLKPMIQ--GLFLEIIN 490
            :......| .::|:  |:::.....:.:|.|......::|:..|: ...|.|.::  |.|...:.
Mouse   366 DAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVC 430

  Fly   491 IDMPSKEERFEIL----RWMHVRETF-----------------------------NDIIYNQKA- 521
            :.:|.:..|..||    |.:.:.|||                             |.::..|:| 
Mouse   431 LGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKQQAQ 495

  Fly   522 ------IEQLPLFSRENQSQFMPRISPSWRETLNVLQDVAAKSQGFLLGDLQLLYDNAVRMKIRN 580
                  ||.||  |..:|.:.:.....|  ||.:.||.:..     ||.|...|.:        .
Mouse   496 QKKKPEIEGLP--SEGDQEERLGAEPTS--ETQDELQRLLG-----LLRDQDPLSE--------E 543

  Fly   581 RLGRTTLDMSHFAKNLTDMQSSFADSLGAPKVPKVYWSDIGGLAKLKDEIQSSIGLPLKH---VH 642
            ::....::::.|...|.::|.| |...|...||.|.|:|||.|..::||:..:|..|:::   ..
Mouse   544 QMQGLCIELNDFIVALAEVQPS-AKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFR 607

  Fly   643 LMGKNLRRSGILLYGPPGTGKTLVAKAVATECNLSFLSVQGPELLNMYVGQSEQNVREVFSRARS 707
            .:|.. ..:||||.||||.||||:|||||.|..|:|:||:||||||||||:||:.||:||.||::
Mouse   608 TLGLG-TPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKN 671

  Fly   708 AAPCVLFLDELDSLAPNRGVAGDSGGVMDRVVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDP 772
            :||||:|.||:|:|.|.|  :....|...|||:|||.||||:   :|.:.:||||||||||:|||
Mouse   672 SAPCVIFFDEVDALCPRR--SDRETGASVRVVNQLLTEMDGL---ETRQQVFILAATNRPDIIDP 731

  Fly   773 ALLRPGRFDKLFYVGPCSTAEDKAAVLRAQTQ---RFALDAGVDMEQIAERLKSE-MSGADLYSI 833
            |:|||||.||..:||....| |:.|:|:..|:   :..||..|::|.||..|:.. .:||||.::
Mouse   732 AILRPGRLDKTLFVGLPPPA-DRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYTGADLTAL 795

  Fly   834 CSNAWLSAVRRTIDGHLSGTISEKELVPENVIVQEEDFTKSFNKFVPSISAKDLEYFNNLKASYS 898
            ...|.|.|:|:.|....:| :...||.     |..:.|..:|.|..||||.||...:..|:.|.|
Mouse   796 VREASLCALRQEITAQKNG-VGAGELK-----VSHKHFEDAFKKVKPSISIKDQVMYEALQRSLS 854

  Fly   899  898
            Mouse   855  854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex6NP_001027403.2 SpoVK <367..600 CDD:440232 61/278 (22%)
RPT1 <609..883 CDD:440835 129/280 (46%)
NvlNP_080447.1 Interaction with RPL5. /evidence=ECO:0000250|UniProtKB:O15381 1..219
Nucleolin_bd 2..72 CDD:465247
Nucleolar localization signal. /evidence=ECO:0000269|PubMed:21474449 49..52
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 83..234
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:O15381 85..88
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:O15381 217..231
CDC48 <242..855 CDD:273521 201/585 (34%)
Interaction with WDR74. /evidence=ECO:0000250|UniProtKB:O15381 266..473 41/171 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..523 7/30 (23%)
Blue background indicates that the domain is not in the aligned region.

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