DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pex6 and nsfb

DIOPT Version :9

Sequence 1:NP_001027403.2 Gene:Pex6 / 3772165 FlyBaseID:FBgn0033564 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001019625.2 Gene:nsfb / 554200 ZFINID:ZDB-GENE-050808-1 Length:747 Species:Danio rerio


Alignment Length:491 Identity:142/491 - (28%)
Similarity:224/491 - (45%) Gaps:104/491 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   462 RKHPIVV---VALTSDRHL---KPMIQGLFLEIINIDMPSKEERFEILRWMHVRETFNDIIYNQK 520
            |.||.||   :|.:..:..   ..:.|.:.:.:.|.| ||::         :|.....:|.:.||
Zfish    50 RTHPSVVPGTIAFSLPQRKWAGLSLNQDVEVSVYNFD-PSRQ---------YVGTMTIEIDFLQK 104

  Fly   521 -------------AIEQLPLFSRENQS---QFMPRISPSWRETL--NVLQDVAAKSQGFLLG--- 564
                         |||.:..|:.:..|   ||:    .|:.:.|  .|::|:.|.....|.|   
Zfish   105 KSIDSNPYDSDKMAIEFIQCFTAQAFSMSQQFV----FSFCDKLFALVIKDIEAMDPSILRGEQN 165

  Fly   565 -------DLQLLYDNAVRMKIRNRLGRTTLDMSHFAKNLTDMQSSFADSLGAPKVPKVYWS---- 618
                   |:.||:.|:  ..|..:...:::::...||.....||          :....|:    
Zfish   166 SSKKHKIDIGLLHGNS--QVIFEKAESSSVNLIGKAKTKGSRQS----------IINPDWNFERM 218

  Fly   619 DIGGLAKLKDEI----QSSIGLPLKHVHLMG-KNLRRSGILLYGPPGTGKTLVAKAVATECNLSF 678
            .||||.|...:|    .:|...|...|..|| |:::  |||||||||.||||:|:.:....|...
Zfish   219 GIGGLDKEFSDIFRRAFASRVFPPDIVEQMGCKHVK--GILLYGPPGCGKTLMARQIGKMLNARE 281

  Fly   679 LS-VQGPELLNMYVGQSEQNVREVFSRAR--------SAAPCVLFLDELDSLAPNRGVAGDSGGV 734
            .. |.|||:||.|||:||.|:|::|:.|.        ::...::..||:|::...||....|.||
Zfish   282 PKVVNGPEILNKYVGESEANIRKLFADAEEEQKRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV 346

  Fly   735 MDRVVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVG-PCSTAEDKAAV 798
            .|.||:|||:::||:   :....|.::..||||||||.|||||||.:....:| |..|.  :..:
Zfish   347 HDTVVNQLLSKIDGV---EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDETG--RVQI 406

  Fly   799 LRAQT----QRFALDAGVDMEQIAERLKSEMSGADLYSICSNAWLSAVRRTIDGHLSGTI----- 854
            |...|    |...|...||::::|...|: .|||:|..:...|..:|:.|    |:..|.     
Zfish   407 LNIHTAKMKQSNMLAKDVDVKELAVETKN-YSGAELEGLVRAAQSTAMNR----HIKATTQVEVD 466

  Fly   855 SEKELVPENVIVQEEDFTKSFNKFV-PSISAKDLEY 889
            :||   .:.:.|...||..|.|..: |:..:...:|
Zfish   467 TEK---AQTLQVSRSDFLASLNNDIKPAFGSNQEDY 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex6NP_001027403.2 SpoVK 367..847 CDD:223540 131/441 (30%)
P-loop_NTPase 367..492 CDD:304359 8/35 (23%)
AAA 653..787 CDD:278434 61/142 (43%)
nsfbNP_001019625.2 CDC48_N 5..85 CDD:308138 7/34 (21%)
CDC48_2 111..183 CDD:215011 18/77 (23%)
SpoVK <220..490 CDD:223540 101/284 (36%)
AAA 538..670 CDD:214640
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.