DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex6 and Atad2

DIOPT Version :10

Sequence 1:NP_001027403.2 Gene:Pex6 / 3772165 FlyBaseID:FBgn0033564 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001128351.1 Gene:Atad2 / 314993 RGDID:1304849 Length:1373 Species:Rattus norvegicus


Alignment Length:365 Identity:119/365 - (32%)
Similarity:182/365 - (49%) Gaps:65/365 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   530 RENQSQFMPRISPSWRETLNVLQDVAAKSQGFLLGDLQLLYDNAVRMKIRNRLGRTTLDMSHFAK 594
            :.|:::.:.|..|     ||..:|           :::.:|.:  ||||              ..
  Rat   362 KRNRNRAINRCLP-----LNFRKD-----------EIRGIYKD--RMKI--------------GA 394

  Fly   595 NLTDMQSSFADSLGAPKVPKVYWSDIGGLAKLKDEIQSSIGLPLKHVHLMGKNLRR--SGILLYG 657
            ||.|:.....||       .|.:..:|||:.....::..:..||.:..:..|...:  .|.|.||
  Rat   395 NLADVDPMQLDS-------SVRFDSVGGLSSHIAALKEMVLFPLLYPEVFEKFKIQPPRGCLFYG 452

  Fly   658 PPGTGKTLVAKAVATECN-----LSFLSVQGPELLNMYVGQSEQNVREVFSRARSAAPCVLFLDE 717
            ||||||||||:|:|.||:     ::|...:|.:.|:.:||:||:.:|.:|.:|....|.::|.||
  Rat   453 PPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAIIFFDE 517

  Fly   718 LDSLAPNRGVAGDSGGVMDRVVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDK 782
            :|.|||.|....|.  :...:||.|||.|||:   |:...|.::.||||.|.|||||.||||||:
  Rat   518 IDGLAPVRSSRQDQ--IHSSIVSTLLALMDGL---DSRGEIVVIGATNRLDSIDPALRRPGRFDR 577

  Fly   783 LFYVGPCSTAEDKAA---VLRAQTQRFALDAGVDM--EQIAERLKSEMSGADLYSICSNAWLSAV 842
            .|..    :..||.|   :|:..|:.:. ...|||  |::||.... ..|||:.|||:.|.|.|:
  Rat   578 EFLF----SLPDKDARKEILKIHTRDWN-PKPVDMFLEELAENCVG-YCGADIKSICAEAALCAL 636

  Fly   843 RRTIDGHLSGTISEK-ELVPENVIVQEEDFTKSFNKFVPS 881
            ||......  |.||| :|...::.:..:||..:..|.:|:
  Rat   637 RRRYPQIY--TTSEKLQLDLSSINISAKDFETAMQKIIPA 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex6NP_001027403.2 SpoVK <367..600 CDD:440232 14/69 (20%)
RPT1 <609..883 CDD:440835 103/286 (36%)
Atad2NP_001128351.1 RecA-like_Yta7-like 412..581 CDD:410925 71/173 (41%)
AAA_lid_3 609..643 CDD:465537 14/34 (41%)
ycf46 <778..919 CDD:177094
Bromo_AAA 972..1082 CDD:99957
Blue background indicates that the domain is not in the aligned region.

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