DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex6 and cdc48

DIOPT Version :9

Sequence 1:NP_001027403.2 Gene:Pex6 / 3772165 FlyBaseID:FBgn0033564 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_593287.2 Gene:cdc48 / 2542744 PomBaseID:SPAC1565.08 Length:815 Species:Schizosaccharomyces pombe


Alignment Length:720 Identity:218/720 - (30%)
Similarity:346/720 - (48%) Gaps:116/720 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 IRSNCWVQVEHFADEQTIPGI--ATKAHVYLVADPHE-LPAELTEVILSNYFNTPRLMHRGHTYR 254
            :|:|..|::.........|.|  |.:..|..:||..| |...|.:|.|..||        ...||
pombe   108 VRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPYF--------VEAYR 164

  Fly   255 IEVNAELVGTATYAHYYLIFAHLRHVHLKCIHLETKGSEFELQAIVAKNFSNLVQVPASH---SF 316
            .....:|         :::...:|.|            ||::..:....|..:.|....|   ..
pombe   165 PIRKGDL---------FVVRGSMRQV------------EFKVVDVAPDEFGIVSQDTIIHWEGEP 208

  Fly   317 LPRQVLDSMAIVENYP--SGLRKPYKLLRSSVDAFLPKKSACL-SSKHIFPV--FLLQGERGSGK 376
            :.|:..:|......|.  .|.|:....:|..|:  ||.:...| .|..|.|.  .|:.|..|:||
pombe   209 INREDEESSLAEVGYDDIGGCRRQMAQIRELVE--LPLRHPQLFKSIGIKPPRGILMYGPPGTGK 271

  Fly   377 SKLVSAVAQELGMHIYGADCAEIVSQVPSHTEMKLKAVFAKSQVCEPLMICFHNFEIFGIDNE-- 439
            :.:..|||.|.|...:..:..||:|::...:|..|:..|.:::...|.:|.....:......|  
pombe   272 TLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKT 336

  Fly   440 -GNEDLRLLSAFHVQVQELFN--RDRKHPIVVVALTSDRHLKPMIQ--GLFLEIINIDMPSKEER 499
             |..:.|::|    |:..|.:  :.|.:.:|:.|......:.|.::  |.|...:::.:|....|
pombe   337 NGEVERRVVS----QLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGR 397

  Fly   500 FEILRWMHVRETFNDIIYNQKAIEQLPLFSRENQSQFMPRISPSWRETLNVLQDVAAKSQGFLLG 564
            .|||| :|.:        |.|..:.:.                        |:.:||::.|::..
pombe   398 LEILR-IHTK--------NMKLADDVD------------------------LEQIAAETHGYVGS 429

  Fly   565 DLQLLYDNAVRMKIRNRLGRTTLDMSHFAKNLTD----MQSSFADSLGAP----------KVPKV 615
            ||..|...|...:||.::....||.......:.|    ...:|..:||:.          :||.|
pombe   430 DLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRETVVEVPNV 494

  Fly   616 YWSDIGGLAKLKDEIQSSIGLPLKHVHLMGKNLR-----RSGILLYGPPGTGKTLVAKAVATECN 675
            .|.|||||.::|.|::.::.:|:.:..   |.||     ..|:|.:|||||||||:|||:|.||:
pombe   495 RWEDIGGLEEVKRELRETVQMPVMYAE---KFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECS 556

  Fly   676 LSFLSVQGPELLNMYVGQSEQNVREVFSRARSAAPCVLFLDELDSLAPNRGV-AGDSGGVMDRVV 739
            .:|:||:|||||:|:.|:||.|||::|.:||:|||||:|||||||:|..||. |||||| .||||
pombe   557 ANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGG-GDRVV 620

  Fly   740 SQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGPCSTAEDKAAVLRAQTQ 804
            :|||.||||:   ::.|.:|::.||||||.|||||:||||.|:|.|| |....|.:.::|:.|.:
pombe   621 NQLLTEMDGV---NSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYV-PLPDEEARFSILQTQLR 681

  Fly   805 RFALDAGVDMEQIAERLKSEMSGADLYSICSNAWLSAVRRTIDGHLSGTISEKELVPENVIVQEE 869
            ...:...||:..:|:.... .|||||..:...|...|::.:|:..:... :|....|.:.:|.:|
pombe   682 HTPVAEDVDLRAVAKATHG-FSGADLEFVVQRAVKLAIKDSIEEDIKRE-NETGEAPADDVVMDE 744

  Fly   870 DFTKS 874
            |.:.|
pombe   745 DASVS 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex6NP_001027403.2 SpoVK 367..847 CDD:223540 172/506 (34%)
P-loop_NTPase 367..492 CDD:304359 30/131 (23%)
AAA 653..787 CDD:278434 86/134 (64%)
cdc48NP_593287.2 CDC48_N 45..127 CDD:280513 3/18 (17%)
CDC48 58..782 CDD:273521 218/720 (30%)
CDC48_2 151..209 CDD:215011 14/86 (16%)
AAA 261..390 CDD:278434 30/132 (23%)
AAA 534..666 CDD:278434 87/136 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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