DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment His2A:CG33859 and h2ac1

DIOPT Version :9

Sequence 1:NP_001027376.1 Gene:His2A:CG33859 / 3772139 FlyBaseID:FBgn0053859 Length:124 Species:Drosophila melanogaster
Sequence 2:NP_001025500.1 Gene:h2ac1 / 594915 XenbaseID:XB-GENE-5901183 Length:138 Species:Xenopus tropicalis


Alignment Length:126 Identity:95/126 - (75%)
Similarity:109/126 - (86%) Gaps:7/126 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGRGKGGKVK----GKAKSRSDRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 61
            ||||||  ||:    ||: |||.:||||||||||||||||||||||:|:|:.:||||.:|||.||
 Frog     1 MSGRGK--KVQKAASGKS-SRSAKAGLQFPVGRIHRLLRKGNYAERIGSGSAIYLAATLEYLCAE 62

  Fly    62 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
            ||||||||||||||:||:|||:|||:|||:||.||..|||||.||||||||:.||||||.|
 Frog    63 VLELAGNAARDNKKSRILPRHIQLAVRNDDELAKLFDGVTIADGGVLPNIQSALLPKKTSK 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
His2A:CG33859NP_001027376.1 H2A 16..121 CDD:197711 83/104 (80%)
H2A 16..119 CDD:238029 81/102 (79%)
h2ac1NP_001025500.1 H2A 6..120 CDD:238029 86/116 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D607367at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.