DRSC/TRiP Functional Genomics Resources

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Protein Alignment mus201 and RAD27

DIOPT Version :9

Sequence 1:NP_001027230.1 Gene:mus201 / 3772069 FlyBaseID:FBgn0002887 Length:1236 Species:Drosophila melanogaster
Sequence 2:NP_012809.1 Gene:RAD27 / 853747 SGDID:S000001596 Length:382 Species:Saccharomyces cerevisiae


Alignment Length:475 Identity:101/475 - (21%)
Similarity:172/475 - (36%) Gaps:139/475 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   708 NRLSPNKTPS--KNKSIKDFFETSYVVK------------RTPDKSQASNETSPGTPKTPKPFFR 758
            |.:.....||  :...||.||.....:.            |..|..|.:||....|......|:|
Yeast     7 NAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYR 71

  Fly   759 KRTPKSGRKRASDANEDSDEEVSPTKRSSKASKSLFEPKEPEEEKTVDPEEIIKDAAEALKSQKT 823
                         .....|..:.|.        .:|:.|.|:    :...|:.|.::..::::| 
Yeast    72 -------------TLRMIDNGIKPC--------YVFDGKPPD----LKSHELTKRSSRRVETEK- 110

  Fly   824 SEELQELATNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFL 888
              :|.|..|         |:|:.:|:|..:.:|:..:.:.|:||.|.|||||:||.|||||||.|
Yeast   111 --KLAEATT---------ELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAEL 164

  Fly   889 NATDLTHGTITDDSDIWLFGGRTVYKNFF---------AQNKHVMEFRAEQIEQTFNCNRGKLIQ 944
            ......:...::|.|      ...|:..|         |:.:.:.|...|.:.:..:....:.:.
Yeast   165 AKKGKVYAAASEDMD------TLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVD 223

  Fly   945 LACLVGSDYTTGIHGIGAVTALEILASFSGQDANGPGICNQSVLQTLIKF--------------R 995
            |..::|.||...|.|:|.||||:::.:...             ::.:::|              .
Yeast   224 LCIMLGCDYCESIRGVGPVTALKLIKTHGS-------------IEKIVEFIESGESNNTKWKIPE 275

  Fly   996 DWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLAP-TIDDNRDAFSWGTPDVES 1059
            ||          |...||:                      .:|.| .||.|.....|..|..:.
Yeast   276 DW----------PYKQARM----------------------LFLDPEVIDGNEINLKWSPPKEKE 308

  Fly  1060 IREF--TRKSFGWTTSKTDDILMPVMKKINEKKIQGSIRNYFTAKSALRVQQPHVSKRVQLAIDK 1122
            :.|:  ..|.|.....|:.   :..:||..:..|||.:..:|......:.|....:||.|     
Yeast   309 LIEYLCDDKKFSEERVKSG---ISRLKKGLKSGIQGRLDGFFQVVPKTKEQLAAAAKRAQ----- 365

  Fly  1123 MSGKIDETPEKPKKVTRTRR 1142
            .:.|::   :...|||:.||
Yeast   366 ENKKLN---KNKNKVTKGRR 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mus201NP_001027230.1 rad2 1..1122 CDD:273166 95/453 (21%)
PIN_XPG 1..>121 CDD:189038
PIN_XPG <814..1084 CDD:189038 63/295 (21%)
H3TH_XPG 940..1045 CDD:188624 20/119 (17%)
RAD27NP_012809.1 PTZ00217 1..364 CDD:240317 93/447 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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