DRSC/TRiP Functional Genomics Resources

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Protein Alignment mus201 and Gen1

DIOPT Version :10

Sequence 1:NP_001027230.1 Gene:mus201 / 3772069 FlyBaseID:FBgn0002887 Length:1236 Species:Drosophila melanogaster
Sequence 2:NP_796305.3 Gene:Gen1 / 209334 MGIID:2443149 Length:908 Species:Mus musculus


Alignment Length:489 Identity:105/489 - (21%)
Similarity:189/489 - (38%) Gaps:133/489 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   845 RNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGG 909
            ::|..:.|.|..:.:..:|.|:|...|:|::.|..||||.||:|||:....|.:|:|.|.:|:|.
Mouse    99 KSRSQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGA 163

  Fly   910 RTVYKNFFAQNK--HVMEFRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILAS 971
            :|||:||....|  ||..:....|:.....:|..|:.||.|:|.|| ..|:.|:|...||::|..
Mouse   164 QTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQI 228

  Fly   972 FSGQDANGPGICNQSVLQTLIKFRDWWQAHKCSNLP---------------PGSSA-----RLAL 1016
            |.|          ||:||   :|..|.: ..|.::|               |||..     ...|
Mouse   229 FKG----------QSLLQ---RFNQWIE-DPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCIL 279

  Fly  1017 RKKLKNIELH---------------------------------EGFPSGAVVEAYLAPTIDDNR- 1047
            .|..|..|.|                                 ||||...|::.:|   ::.|: 
Mouse   280 CKSDKYCEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFL---LNKNKM 341

  Fly  1048 -DAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKIN--EKKIQGSIRNYFTAKSALRVQQ 1109
             ...::..||:...:.||.:...|.:....:.|:.::.:.:  |:|......|..   ..:|:.:
Mouse   342 LKPITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQL---QPIRIVK 403

  Fly  1110 PHVSKRVQ------------------------LAIDKMS--------------GKIDETPEKPKK 1136
            |.|...|.                        |.:::.|              .::.||..:.:|
Mouse   404 PRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVYQKQLSETKGRKQK 468

  Fly  1137 VTRTRRAKAAPPTDDDLAIAD-----VATKAARPKRGKR---KAAPESVVLDGELPSTSQSIPKP 1193
            ..:.:...:..|..||:..:.     ..|..|.||:..:   :.:|:.::.......:..|...|
Mouse   469 SMKNKPKGSHLPEADDVINSQSLMTLKPTSKAFPKQNPKINLENSPDPILAQESTSPSLNSFVSP 533

  Fly  1194 EKCPRIPSSVEVIP-------QREKDLEQMRLNK 1220
            |..|.:....:::|       ::.||:....:::
Mouse   534 ENAPCLNLQEQLVPSPRTLAIKQSKDVSHFLVSE 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mus201NP_001027230.1 rad2 1..1122 CDD:273166 86/360 (24%)
Gen1NP_796305.3 PIN_GEN1 2..206 CDD:350217 38/106 (36%)
XPG-N domain. /evidence=ECO:0000250|UniProtKB:Q17RS7 2..96
XPG-I domain. /evidence=ECO:0000250|UniProtKB:Q17RS7 122..208 33/85 (39%)
H3TH_StructSpec-5'-nucleases 195..337 CDD:473957 38/158 (24%)
5'-3' exonuclease domain. /evidence=ECO:0000250|UniProtKB:Q17RS7 208..383 39/191 (20%)
Chromodomain. /evidence=ECO:0000250|UniProtKB:Q17RS7 389..463 8/76 (11%)
Chromo_2 397..457 CDD:465841 6/59 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..482 4/21 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 629..650
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 792..834
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 853..886
Blue background indicates that the domain is not in the aligned region.

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