DRSC/TRiP Functional Genomics Resources

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Protein Alignment nw and Reg4

DIOPT Version :9

Sequence 1:NP_001027435.2 Gene:nw / 3772015 FlyBaseID:FBgn0283508 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_001004096.1 Gene:Reg4 / 445583 RGDID:1303341 Length:157 Species:Rattus norvegicus


Alignment Length:194 Identity:42/194 - (21%)
Similarity:61/194 - (31%) Gaps:71/194 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LFCLLSLLA------------CAAGQRITTIHLDGVQYFISRMNPYSPELNYFLAYQYCRSL--G 56
            |..|||.:|            ||:|......|..|  ||....|....||.       |:|.  |
  Rat     8 LLLLLSWVAGPEVLSDILRPSCASGWFNYRSHCYG--YFRKLRNWSHAELE-------CQSYGNG 63

  Fly    57 LQLASFETKEKAESMTTYLKNAGYGNYDFWTSGNRLGTGMFLWMSTGLPFNATFDFFENSADAIQ 121
            ..|||....::|..::.|:  .||                    ...||              :.
  Rat    64 SHLASVLNPKEASVISKYI--TGY--------------------QRSLP--------------VW 92

  Fly   122 AGLLDP--------VDHNSNTSPQRTARDSSSGAEKGCVIL--KQPTLKWMPEDCSAVKDFICE 175
            .||.||        :|.::|.....:.|..|..  :.|..:  |...|.|....|:..:.|:|:
  Rat    93 IGLHDPQKNASWQWIDGSTNQYRPWSPRTKSEA--RHCTEMNPKDKFLTWNKNGCTKRQHFLCK 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nwNP_001027435.2 CLECT 31..176 CDD:153057 32/157 (20%)
Reg4NP_001004096.1 CLECT_REG-1_like 29..155 CDD:153064 37/173 (21%)
Carbohydrate-binding. /evidence=ECO:0000250 97..101 2/3 (67%)
Carbohydrate-binding. /evidence=ECO:0000250 134..136 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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