DRSC/TRiP Functional Genomics Resources

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Protein Alignment nw and Reg1a

DIOPT Version :9

Sequence 1:NP_001027435.2 Gene:nw / 3772015 FlyBaseID:FBgn0283508 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_036773.1 Gene:Reg1a / 24714 RGDID:3552 Length:165 Species:Rattus norvegicus


Alignment Length:206 Identity:45/206 - (21%)
Similarity:74/206 - (35%) Gaps:85/206 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IVLFCLLSLLACAAGQ---------RITTIHLDGVQYFISRMNPYSPELNYFL--------AYQY 51
            |:|.||: :|:.:.||         |||.  .:|       .|.||....||:        |..:
  Rat     8 ILLSCLM-VLSPSQGQEAEEDLPSARITC--PEG-------SNAYSSYCYYFMEDHLSWAEADLF 62

  Fly    52 CRSLGL-QLASFETKEKAESMTTYLKNAG-------YGNYD-------FWTSGNRLGTGMFLWMS 101
            |:::.. .|.|..::.:...:.:.:|.:|       .|.:|       .|:||:     :||:.|
  Rat    63 CQNMNSGYLVSVLSQAEGNFLASLIKESGTTAANVWIGLHDPKNNRRWHWSSGS-----LFLYKS 122

  Fly   102 --TGLPFNATFDFFENSADAIQAGLLDPVDHNSNTSPQRTARDSSSGAEKGCVILKQPTLKWMPE 164
              ||.|                        :|||.. ...:..|:||.:           ||...
  Rat   123 WDTGYP------------------------NNSNRG-YCVSVTSNSGYK-----------KWRDN 151

  Fly   165 DCSAVKDFICE 175
            .|.|...|:|:
  Rat   152 SCDAQLSFVCK 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nwNP_001027435.2 CLECT 31..176 CDD:153057 34/170 (20%)
Reg1aNP_036773.1 CLECT 35..163 CDD:295302 35/178 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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