DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nw and Reg3b

DIOPT Version :9

Sequence 1:NP_001027435.2 Gene:nw / 3772015 FlyBaseID:FBgn0283508 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_445741.1 Gene:Reg3b / 24618 RGDID:3254 Length:180 Species:Rattus norvegicus


Alignment Length:126 Identity:21/126 - (16%)
Similarity:40/126 - (31%) Gaps:34/126 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 LASFETKEKAESMTTYLKNAGYGNYDF-W------TSGNRLGTGMFLWMSTGLPFNATFDFFENS 116
            |.|.....:|..:.:.:||.| .:|.: |      |.|.....|.:.|.:..:.....::  .|.
  Rat    81 LVSVLNVAEASFLASMVKNTG-NSYQYTWIGLHDPTLGGEPNGGGWEWSNNDIMNYVNWE--RNP 142

  Fly   117 ADAIQAGLLDPVDHNSNTSPQRTARDSSSGAEKGCVILKQPTLKWMPEDCSAVKDFICEQT 177
            :.|:..|....:..:|.                        .|:|....|.....::|:.|
  Rat   143 STALDRGFCGSLSRSSG------------------------FLRWRDTTCEVKLPYVCKFT 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nwNP_001027435.2 CLECT 31..176 CDD:153057 20/123 (16%)
Reg3bNP_445741.1 CLECT_REG-1_like 45..178 CDD:153064 20/123 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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