DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nw and Reg3b

DIOPT Version :9

Sequence 1:NP_001027435.2 Gene:nw / 3772015 FlyBaseID:FBgn0283508 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_035166.1 Gene:Reg3b / 18489 MGIID:97478 Length:175 Species:Mus musculus


Alignment Length:219 Identity:38/219 - (17%)
Similarity:63/219 - (28%) Gaps:96/219 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKIVLFCLLSL----------------LACAAGQRITTIHLDGVQYFISRMNPYSPELNYFLAY 49
            |:.::|.||:.|                ::|..|.:                           ||
Mouse    10 MSWMLLSCLMLLSQVQGEDSLKNIPSARISCPKGSQ---------------------------AY 47

  Fly    50 -QYCRSL------------------GLQLASFETKEKAESMTTYLKNAGYGNYDF-W------TS 88
             .||.:|                  |..|.|.....:|..:::.:|..| .:|.: |      |.
Mouse    48 GSYCYALFQIPQTWFDAELACQKRPGGHLVSVLNSAEASFLSSMVKRTG-NSYQYTWIGLHDPTL 111

  Fly    89 GNRLGTGMFLWMSTGLPFNATFDFFENSADAIQAGLLDPVDHNSNTSPQRTARDSSSGAEKGCVI 153
            |.....|.:.|.:     |...::|.             .:.|.:|:..|....|.|.|      
Mouse   112 GAEPNGGGWEWSN-----NDVMNYFN-------------WERNPSTALDRAFCGSLSRA------ 152

  Fly   154 LKQPTLKWMPEDCSAVKDFICEQT 177
              ...|||....|.....::|:.|
Mouse   153 --SGFLKWRDMTCEVKLPYVCKFT 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nwNP_001027435.2 CLECT 31..176 CDD:153057 30/170 (18%)
Reg3bNP_035166.1 CLECT_REG-1_like 40..173 CDD:153064 32/186 (17%)
EPN. /evidence=ECO:0000250 114..116 0/1 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1509611at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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