DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17768 and snrpd3

DIOPT Version :10

Sequence 1:NP_001027236.1 Gene:CG17768 / 3772012 FlyBaseID:FBgn0032240 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_001017093.1 Gene:snrpd3 / 549847 XenbaseID:XB-GENE-1014502 Length:126 Species:Xenopus tropicalis


Alignment Length:261 Identity:54/261 - (20%)
Similarity:72/261 - (27%) Gaps:89/261 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   379 QPARAGSHRTRTASSPVPIAASA------------------NPSDRGP---QIVIAFATVQFRAP 422
            ||..|||  |..|.:.:|:..:|                  .|...||   .:.:|.|..|....
 Frog     3 QPWAAGS--TDGAPAQLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARALQLALAAFQLLNL 65

  Fly   423 LRRAPFCNLWAPSIAVPKRSGR-LPHGGAYLTDWSPKLTHHPGQTRAAKTAKKGDRAQNGSRSRA 486
            |..........|||.....:|| |..|.||......::....|...|.               |.
 Frog    66 LGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSAC---------------RV 115

  Fly   487 PALFADHQTDPPERPSSVTHATLTPAGALLRLATYSTALLIPEGAIPKHQRHSVALSIVRDDKHH 551
            ..|..||            |..|  .|..:....|...|.:        ..|:..:.:      |
 Frog   116 CILRRDH------------HCRL--LGRCVGFGNYRPFLCL--------LLHAAGVLL------H 152

  Fly   552 VPVPTGPRSTYLSPVVFCGPVDTKVNKPIVMQLPHCAENLSDWAFSLYSAPDNVT--------PW 608
            |.|..||..:.|          .:.:.|:.|    .|..|..|...|...|...|        ||
 Frog   153 VSVLLGPALSAL----------LRAHTPLHM----AALLLLPWLMLLTDNPCPATALTTTKRSPW 203

  Fly   609 C 609
            |
 Frog   204 C 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17768NP_001027236.1 LSm4 2..77 CDD:212470
snrpd3NP_001017093.1 Sm_D3 6..75 CDD:212468 14/70 (20%)
Blue background indicates that the domain is not in the aligned region.

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