DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpp20 and Parva

DIOPT Version :10

Sequence 1:NP_001027078.1 Gene:Rpp20 / 3772007 FlyBaseID:FBgn0066304 Length:167 Species:Drosophila melanogaster
Sequence 2:NP_065631.3 Gene:Parva / 57342 MGIID:1931144 Length:372 Species:Mus musculus


Alignment Length:11 Identity:6/11 - (54%)
Similarity:7/11 - (63%) Gaps:1/11 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 HKRDNEMFIYP 63
            |:||...| ||
Mouse    94 HQRDTLNF-YP 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpp20NP_001027078.1 Rpp20 42..132 CDD:372048 6/11 (55%)
ParvaNP_065631.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
Interaction with ARHGAP31. /evidence=ECO:0000269|PubMed:16860736 21..25
CH_PARVA_rpt1 91..205 CDD:409184 6/11 (55%)
Required for interaction with TESK1 and ILK. /evidence=ECO:0000250|UniProtKB:Q9NVD7 223..372
CH_PARVA_rpt2 244..372 CDD:409186
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.