DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpp20 and Parva

DIOPT Version :9

Sequence 1:NP_001027078.1 Gene:Rpp20 / 3772007 FlyBaseID:FBgn0066304 Length:167 Species:Drosophila melanogaster
Sequence 2:NP_065631.3 Gene:Parva / 57342 MGIID:1931144 Length:372 Species:Mus musculus


Alignment Length:79 Identity:16/79 - (20%)
Similarity:26/79 - (32%) Gaps:28/79 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PRSAKYHKQQNH------------------RVVRKQPPRPAVSDRHNIYITSKTDFKAQQRRCEE 59
            |||.|::....|                  |...:.|...::    .:.:..|.:...|.|:.:|
Mouse   172 PRSIKWNVDSVHAKNLVAILHLLVALSQYFRAPIRLPDHVSI----QVVVVQKREGILQSRQIQE 232

  Fly    60 LIN------SGAHE 67
            .|.      ||.||
Mouse   233 EITGNTEALSGRHE 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpp20NP_001027078.1 Rpp20 39..132 CDD:289126 9/35 (26%)
ParvaNP_065631.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
Interaction with ARHGAP31. /evidence=ECO:0000269|PubMed:16860736 21..25
CH 96..203 CDD:366016 5/30 (17%)
Required for interaction with TESK1 and ILK. /evidence=ECO:0000250|UniProtKB:Q9NVD7 223..372 8/24 (33%)
CH 263..369 CDD:366016
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3631
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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