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Protein Alignment Rpp20 and pat-6
DIOPT Version :9
Sequence 1: | NP_001027078.1 |
Gene: | Rpp20 / 3772007 |
FlyBaseID: | FBgn0066304 |
Length: | 167 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_499891.1 |
Gene: | pat-6 / 176848 |
WormBaseID: | WBGene00003932 |
Length: | 375 |
Species: | Caenorhabditis elegans |
Alignment Length: | 188 |
Identity: | 41/188 - (21%) |
Similarity: | 60/188 - (31%) |
Gaps: | 70/188 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 28 RKQPPRPAVSDRHNIYITSKTDFKAQQRRCEELINSGAHEIFLHCMGFSVTRGLNIALR------ 86
|.:|.:|.|.:: ::.....|.:....|.....||| |.........|.:..|
Worm 12 RDEPKKPGVFEK----LSGTLSRKKKAPEDEHGNQGGAH----HATDEDEVLELELEGREALDQS 68
Fly 87 ----LVQN---SDGALSYAINTST------VQLVDEL-----HPLCDAEDITFRQRNNSALHIKI 133
|.:| .:|.:...:...| .|:||.| ..|.| || :.::.
Worm 69 LVPVLARNIWLEEGEIRRYLTKETARDQKLAQVVDLLIYWLNEELAD-------QR----IVVRH 122
Fly 134 LNNSLFD---------------IAVPQPSQS------------QTQAQSLGQFRGKAK 164
|...||| |.||:.||| ||..:.|||.|.:.|
Worm 123 LQEDLFDGQIIQKLLEKLEQIRIEVPEVSQSEEGQRQKLQIVVQTANRILGQPREQEK 180
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Rpp20 | NP_001027078.1 |
Rpp20 |
39..132 |
CDD:289126 |
20/116 (17%) |
pat-6 | NP_499891.1 |
CH |
103..201 |
CDD:278723 |
23/89 (26%) |
CH |
268..368 |
CDD:278723 |
|
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_KOG3631 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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