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Protein Alignment Rpp20 and parvg
DIOPT Version :9
Sequence 1: | NP_001027078.1 |
Gene: | Rpp20 / 3772007 |
FlyBaseID: | FBgn0066304 |
Length: | 167 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001083007.1 |
Gene: | parvg / 100037387 |
ZFINID: | ZDB-GENE-070410-67 |
Length: | 315 |
Species: | Danio rerio |
Alignment Length: | 92 |
Identity: | 25/92 - (27%) |
Similarity: | 41/92 - (44%) |
Gaps: | 16/92 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 37 SDRHNIYIT---SKTDF-KAQQRRC--EELINSGAHEI------FLHCMGFSV-TRGLNIALRLV 88
:|:...:|| |..:. :...:.| :||....||:| .||.:..:: :.|||:.....
Zfish 168 ADKQTEFITFSESSNELDRESNKECPIDELFKLEAHKIETVKKAILHFVNKNMASLGLNVTDLDK 232
Fly 89 QNSDGALSYAINTSTVQLVDELHPLCD 115
|.:||.:...: ..||.|...||||
Zfish 233 QFADGVILLLL---IGQLEDFFIPLCD 256
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Rpp20 | NP_001027078.1 |
Rpp20 |
39..132 |
CDD:289126 |
24/90 (27%) |
parvg | NP_001083007.1 |
CH |
38..138 |
CDD:278723 |
|
CH |
208..310 |
CDD:278723 |
15/52 (29%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_KOG3631 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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