DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18749 and p4ha2

DIOPT Version :9

Sequence 1:NP_001027154.1 Gene:CG18749 / 3771984 FlyBaseID:FBgn0042182 Length:491 Species:Drosophila melanogaster
Sequence 2:XP_012814344.2 Gene:p4ha2 / 493342 XenbaseID:XB-GENE-957618 Length:537 Species:Xenopus tropicalis


Alignment Length:525 Identity:144/525 - (27%)
Similarity:241/525 - (45%) Gaps:99/525 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 STMELMKLLEVEDELVDNLKGYVKTLKMKFNLMERSLIDMSRENMEMKSDYESYLGNPLNSFRLI 99
            ||.::..|:..|.:|:.:||.|::..:.:.:.::|...::...:....:|.|.|||:|:|:::|:
 Frog    26 STGQMTDLIFRERDLLQSLKEYIREEEERLSKIKRWASEVDELSSRSTADPEGYLGHPVNAYKLV 90

  Fly   100 HRLHTSWRKWYQYAIKVENNALGHIENARLMRKMLPTSSDLQQACRGIHDLMYFYDLKPEELAAG 164
            .|.:|.|.....  :.::::|.|.|.|....|:..||..|...|.|.:..:...|.|.|:.:|.|
 Frog    91 KRFNTDWSSLEN--LVLQDSAKGFIANFTFQREYFPTEEDETGAARALMRIQDTYKLDPDVIAKG 153

  Fly   165 NLAGYSQPGT----GLTAYDCLALGEFGVQNQKDDLAEAWYNLSLTRFDN----IIEKY------ 215
            .|     |||    .|:|.|...:|:....:........|...:|.:.|.    ::.|.      
 Frog   154 KL-----PGTNYISSLSADDSFGMGKIAYHDGDYYHTVLWMQQALKQMDEGEDAVVNKVDVLDYL 213

  Fly   216 --------QVHKAWAL---LLAKNKQLTEA------FQHFENKPEGIVASNEVIHFEGVLATTQN 263
                    .|.:|..|   |||.:.....|      |:..:.|.:..:..||..:.|.  ||.| 
 Frog   214 SYTVFQLGDVPRALELTKRLLALDPNHDRAVNNLKYFEKMQEKQKAELKQNESTNTES--ATRQ- 275

  Fly   264 CTAVVQKP-------------------------SKKLHCRY-NTSTTPFTRIAPLKMEELGLDPY 302
             ..|..:|                         .::|.||| |.:.:|:..::|:|:|:....|.
 Frog   276 -PGVYSRPLDYLPERDVYEALCRGEGVKMNPRRQRRLFCRYHNGNRSPYLILSPVKVEDEWDSPR 339

  Fly   303 MVVFHDVIYDTEI--------------------DGMLNSSDFGLSESVSGLKSEVRTSKDSHIVD 347
            :|.:.:.:.|.||                    .|:|:.:::.:|      ||......|..:: 
 Frog   340 IVRYLNALSDEEIAKIKELAKPKLARATVRDPKTGVLSVANYRVS------KSAWLEENDDPVI- 397

  Fly   348 AKTLNERVTDMTGLSMEMSDPFSLINYGLGGHFILHHDF---HEYTNTTRLKQGDRIATVLFYLR 409
             ..:|.|:..:|||:::.::...:.|||:||.:..|.||   .|.....||..|:|:||.|.|:.
 Frog   398 -ARVNLRMQAITGLTVDTAELLQVANYGMGGQYEPHFDFSRKDEPDVFKRLGTGNRVATFLNYMS 461

  Fly   410 EVDSGGATVFPMLNITVMPKKGSAVFWYNLHNSGAVNSKTLHTACPVISGSKYVLTKWINELPQM 474
            :|::|||||||.....:.||||:|||||||..||..:.:|.|.||||:.|||:|..||.:|..|.
 Frog   462 DVEAGGATVFPDFGAAIWPKKGTAVFWYNLFRSGEGDYRTRHAACPVLVGSKWVSNKWFHERGQE 526

  Fly   475 FVTPC 479
            |:.||
 Frog   527 FLRPC 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18749NP_001027154.1 P4Ha_N 35..166 CDD:285528 35/130 (27%)
P4Hc 314..468 CDD:214780 62/176 (35%)
p4ha2XP_012814344.2 P4Ha_N 27..113 CDD:400573 21/87 (24%)
TPR repeat 166..201 CDD:276809 6/34 (18%)
TPR repeat 206..236 CDD:276809 6/29 (21%)
P4Hc 348..521 CDD:214780 64/180 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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