DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18749 and CG4174

DIOPT Version :9

Sequence 1:NP_001027154.1 Gene:CG18749 / 3771984 FlyBaseID:FBgn0042182 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_001034031.2 Gene:CG4174 / 40023 FlyBaseID:FBgn0036793 Length:473 Species:Drosophila melanogaster


Alignment Length:498 Identity:122/498 - (24%)
Similarity:223/498 - (44%) Gaps:73/498 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LSACF-INCQGFVNSNPKK-SYAASTMELMKLLEVEDELVDNLKGYVKTLKMKFNLMERSLIDMS 75
            ::||. ...:|.|.|.|:. .:|.|:...:.||::::..|:||:.|.|.||.....:.|::    
  Fly     8 VTACLGFQVKGEVVSAPESYDFAISSESQLSLLKLKETHVNNLQSYKKVLKKHLQKIRRAI---- 68

  Fly    76 RENMEMKSDYESYLGNPLNSFRLIHRLHTSWRKWYQYAIKVENNALGHIENARLMRKMLPTSSDL 140
            |::.|:....::...|.:..::::..||..|.::::...|  :..|..|..::::....|||.|.
  Fly    69 RQSEELLKSTKTSPRNLIYGYKVLRHLHNDWPQYFRLLKK--DLGLEQIAVSQMLLTQQPTSVDF 131

  Fly   141 QQACRGIHDLMYFYDLKPEELAAGNLAGYSQPGTGLTAYDCLALGEFGVQNQKDDLAEAWYNLSL 205
            :::...:|.|...|:|....:..|.:....:.....:|.:||.||...:..:..:.:|.|..|:|
  Fly   132 EESMGAMHRLQTVYNLDSYAMTEGFIDDKDKNIRNWSADECLMLGLMYLFLKDYNQSENWLELAL 196

  Fly   206 TRF-DNIIEKYQVHKAW------ALLLAKNKQLTEAFQ--------------------------H 237
            ..: ||:..:....|.|      ..|:..||.|...|:                          |
  Fly   197 YHYDDNVSPEVLKIKLWNYPNLLESLVEANKGLGHYFEAKKYANELLSINPNHTYMLTQLPKLKH 261

  Fly   238 FENKPEGIVASNEVIHFEGVLATTQNCTAVVQKPSKKLHCRYNTSTTPFTRIAPLKMEELGLDPY 302
            .::.|..:....:|...:     .:.|:...::.|..|.||| ...|||.::||||||||.:.||
  Fly   262 LQSNPAKLTKPKKVFQLQ-----KEICSKRYRRKSGVLVCRY-VDWTPFLKLAPLKMEELSMKPY 320

  Fly   303 MVVFHDVIYDTEIDGMLNSSDFGLS--ESVSGLKS----EVRTSKDSHIVDAKTLNERVTDMTGL 361
            :.:|:..:...:|:.:.|.|...|.  |.:||..|    .:.||  .|.| .:.:||.:..:||.
  Fly   321 ISIFYGFLGQKDIEVLKNVSRPKLQRIEHLSGNCSCKIGNLSTS--LHDV-VRKVNELILGITGF 382

  Fly   362 SMEMSDPFSLINYGLGGHFILHHDFHEYTNTTRLKQGDRIATVLFYLREVDSGGATVFPMLNITV 426
            .::.:....:||||:.|::          |....|..:: |....:|.....||..|||..::.|
  Fly   383 PLKGNQMLEVINYGIAGNY----------NPEEPKIHNK-ANAFIFLSNAGKGGEIVFPSRHLKV 436

  Fly   427 MPKKGSAVFWYNLHNSGAVNSKTLHTACPVISGSKYVLTKWIN 469
            .|:|||.:.|.||..|      .::..||::.|:.:|..|.:|
  Fly   437 RPRKGSMLVWENLKKS------LIYHQCPILKGNMWVANKVLN 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18749NP_001027154.1 P4Ha_N 35..166 CDD:285528 29/130 (22%)
P4Hc 314..468 CDD:214780 44/159 (28%)
CG4174NP_001034031.2 P4Ha_N 33..157 CDD:285528 28/129 (22%)
TPR repeat 169..197 CDD:276809 8/27 (30%)
TPR repeat 202..245 CDD:276809 8/42 (19%)
2OG-FeII_Oxy <362..470 CDD:304390 35/127 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461881
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 79 1.000 Inparanoid score I2378
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.990

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