DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18749 and p4ha1

DIOPT Version :9

Sequence 1:NP_001027154.1 Gene:CG18749 / 3771984 FlyBaseID:FBgn0042182 Length:491 Species:Drosophila melanogaster
Sequence 2:XP_031761963.1 Gene:p4ha1 / 100490484 XenbaseID:XB-GENE-987760 Length:526 Species:Xenopus tropicalis


Alignment Length:523 Identity:155/523 - (29%)
Similarity:238/523 - (45%) Gaps:97/523 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 YAASTMELMKLLEVEDELVDNLKGYVKTLKMKFNLMERSLIDMSRENMEMKSDYESYLGNPLNSF 96
            :..|...::.||..|.:||.:||.|:|..:.|...:::....:.........|.|.|||:|:|:|
 Frog    20 FFTSIGHMIDLLNTEKDLVTSLKDYIKAEEQKLAQIKKWADKLDHLTDTATKDPEGYLGHPVNAF 84

  Fly    97 RLIHRLHTSWRKWYQYAIKVENNAL-----GHIENARLMRKMLPTSSDLQQACRGIHDLMYFYDL 156
            :|:.||:|.|       :|:||..|     |.|.|..:.|:..|...|...|.:.:..|...|:|
 Frog    85 KLMKRLNTEW-------VKLENLILKDISDGFISNLTIQRQYFPNDEDQTGAAKALLRLQDTYNL 142

  Fly   157 KPEELAAGNLAGYSQPGTGLTAYDCLALGEFGVQNQKDDLAEAWYNLSLTRFD----NIIEK--- 214
            ..:.::.|||.|.... |.|||.||..||:....:......|.|...:|::.|    :.::|   
 Frog   143 DTDTISKGNLPGVKHK-TSLTAEDCFDLGKTAYTDADYYHTELWMEQALSQLDAGEESSLDKVMV 206

  Fly   215 -----YQVHKAWALLLAKNKQLTEAFQHFENKPEGIVASNEVIHF-------------EGVLATT 261
                 |.|::...|    :|.||...:..|..||....:..:.|.             ||....|
 Frog   207 LDYLSYAVYQQGDL----DKALTLTKRSLELDPEHQRGNGNLRHIMSKESNKSSSSPSEGAELRT 267

  Fly   262 QN---------------C----TAVVQKPSKKLHCRY-NTSTTPFTRIAPLKMEELGLDPYMVVF 306
            :.               |    ..:..:..|:|.||| :....|...::|.|.|:....|.:|.:
 Frog   268 RKGRPKDHLEKEKYEKLCRGEGVKMTSRRQKRLFCRYFDGKKDPLLILSPTKQEDEWDKPRIVRY 332

  Fly   307 HDVIYDTEID--------------------GMLNSSDFGLSES--VSGLKSEVRTSKDSHIVDAK 349
            ||:|.|.||.                    |:|.::.:.:::|  :||.:..|          ..
 Frog   333 HDIISDEEISKVKELAKPRLRRATISNPITGVLETAQYRITKSAWLSGYEDPV----------VA 387

  Fly   350 TLNERVTDMTGLSMEMSDPFSLINYGLGGHFILHHDF---HEYTNTTRLKQGDRIATVLFYLREV 411
            .||.|:..:|||.|..::...:.|||:||.:..|.||   :|.....:|..|:|:||.|||:.:|
 Frog   388 RLNRRIEGVTGLDMSTAEELQVANYGIGGQYEPHFDFLRKYEPDAFKKLGTGNRVATWLFYMSDV 452

  Fly   412 DSGGATVFPMLNITVMPKKGSAVFWYNLHNSGAVNSKTLHTACPVISGSKYVLTKWINELPQMFV 476
            ::|||||||.:...|.||||:|||||||..||..:..|.|.||||:.|:|:|..|||:|..|.|.
 Frog   453 EAGGATVFPEVGAAVYPKKGTAVFWYNLLESGEGDYSTRHAACPVLVGNKWVSNKWIHERGQEFR 517

  Fly   477 TPC 479
            .||
 Frog   518 RPC 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18749NP_001027154.1 P4Ha_N 35..166 CDD:285528 39/135 (29%)
P4Hc 314..468 CDD:214780 64/178 (36%)
p4ha1XP_031761963.1 P4Ha_N 24..111 CDD:400573 28/93 (30%)
P4Hc 337..510 CDD:214780 66/182 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.100

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