DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Msp300 and Gas2l3

DIOPT Version :9

Sequence 1:NP_001188695.1 Gene:Msp300 / 3771968 FlyBaseID:FBgn0261836 Length:13540 Species:Drosophila melanogaster
Sequence 2:XP_001056437.2 Gene:Gas2l3 / 680280 RGDID:1594151 Length:678 Species:Rattus norvegicus


Alignment Length:792 Identity:144/792 - (18%)
Similarity:275/792 - (34%) Gaps:222/792 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 RFTLVKTNGQLIIENCRNSE------EKTLVQTTIDQLAASLAQVRGWLDEKKQAVGDSLDAWTR 121
            |..|...:|..:.:.|:..|      |.||:....| |:..|:.:.| :|.|.:.:.:.||....
  Rat    20 RCPLTSRHGPGLADVCQYDEWIAVRHEATLLPMQED-LSIWLSGLLG-IDIKAERLLEELDNGVL 82

  Fly   122 FMNLYQIVMSW-----ASEKRNFIDQTIELRTLP----------EARNKLNDYVTSVKSIKPIVK 171
            ...|..::.:.     :.|..||     .:|.:|          .||:...:::...:.|.....
  Rat    83 LCQLINVLQNMVGAGLSEEPGNF-----PMRKVPCKKDAASGSFFARDNTANFLHWCRRIGVDET 142

  Fly   172 HLSEMDKELEH------------IGQVTTVGDLKDKLQEAEDAKISVEAVLLERNSL-----LQE 219
            :|.|.:..:.|            ||:|.:...::..:....:.:|.:|..||..:.|     :.:
  Rat   143 YLFESEGLVLHKDPRQVYLCLLEIGRVVSRYGVEPPVLVKLEKEIELEETLLNTSGLEESISIPK 207

  Fly   220 ACEEWDQCERKIKDIRSWHEKTKQGLDSSQQQKKPLRDQLGFCEKTLADINVQKTKLRLSIEKLE 284
            :|.:.::....:|.|                    ..|....|..            |.|||.|.
  Rat   208 SCCQQEELHEAVKHI--------------------AEDPPCSCSH------------RFSIEYLS 240

  Fly   285 VHFRNGMGGDPRLSENVDDLVRVLDGLGELVKAKS--QSLEQTLAQIDVYQ-QQMQSLRQRIIQE 346
                   .|..||.|.: ..:|:|.|...:|:...  .:|:..|.:.|..: .|..:|.|:|:  
  Rat   241 -------EGRYRLGEKI-LFIRMLHGKHVMVRVGGGWDTLQGFLLKYDPCRILQFATLEQKIL-- 295

  Fly   347 EQQLRLVMAPTYLPHDRERALAEQQAMRESIDGMQQVYDATAR--KSYALDPHSVVTTSSTVSLL 409
                                     |.::.:.. :.|.|:.||  :...::|.|.|......:| 
  Rat   296 -------------------------AFQKGVSN-ESVPDSPARTPQPPEMNPLSAVNMFQKQNL- 333

  Fly   410 MKPTAAVGLTYAEVLS----GQASPVSS--GNESVTNSRPER--------DPSTTTTTTTTRQQQ 460
             ||...|.:...:...    |...|.||  ||.:..::|.:|        .|..|:.....::..
  Rat   334 -KPGTPVSVPKGKERQVHRPGACLPASSVKGNLASLSTRSKRPDSPASLLHPKVTSLKGIAKKVN 397

  Fly   461 SNDTQNTTTITTIKTTTTTTTTSRSTHGDDDQSQERQELNGGGSTTATANYKRPQQVTPPSENTS 525
            :......:::|::......:|...::.              .|....|.. |.||....|::|:.
  Rat   398 APSNSALSSLTSLNPAAKPSTAKCASE--------------SGRKCVTFP-KTPQTKAVPAQNSR 447

  Fly   526 NTVPNTATTTITNP--NIQFIESERRH-QHHH------AKTGKKLHAPRPERRGR---SPRRRPP 578
            :  |:.:....:.|  ||     |.:| :|:|      :.|..||  |:...:||   ||.:.|.
  Rat   448 D--PSKSRLLPSKPPGNI-----EPKHLKHNHLSSRAESSTCPKL--PKGTMQGRPNLSPFQSPA 503

  Fly   579 QQQKPVESSQQPSIEIQLERQQPQEQEQLFLPADDRTRSRSPMWVPGSTSY------AEVLRGLE 637
            :..||  ||:..:|.:..:.|.|           |||........|...|.      |.|..|  
  Rat   504 KVTKP--SSKTRAIGLGTQSQPP-----------DRTLKSGATSAPRHQSTLNLNNPASVCSG-- 553

  Fly   638 LERIRAEQQAAQAVQGRSDLTIQDVVDASAEVAGSIYIPQPDPEP---PIKETQQPQPPQLEQYI 699
                 :.....|.::|:|.:::......|..:..::. |.....|   |:.....||.....:.:
  Rat   554 -----SSANTTQKLKGKSTVSVAKKPPQSKGICPNLG-PSSSKSPGRTPLSIVTVPQSAAKSETV 612

  Fly   700 TETSTLLDYSTTQQQEQKPPINYEVPMTAEEIAATYLQPDPQLYQTMYENVADSGQWGFVTGSTT 764
            ::::...  ...|...:.||.:.:.|.::                   :|...||: |..:|:.|
  Rat   613 SKSAKTA--MKGQYSAKGPPKSSKAPASS-------------------QNPPSSGK-GADSGNKT 655

  Fly   765 DPQQQQAPQNYY 776
            ...:::...::|
  Rat   656 PTAKKKEEDDHY 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Msp300NP_001188695.1 SPEC 17..220 CDD:238103 36/194 (19%)
SPEC 9546..9732 CDD:295325
sbcc 11187..12008 CDD:129705
SMC_prok_B 11614..12442 CDD:274008
SPEC 11994..12156 CDD:295325
SPEC 12374..12564 CDD:295325
Lipase_chap 12376..12529 CDD:281297
SPEC 12703..12923 CDD:238103
SPEC 12816..13032 CDD:295325
SPEC 13196..13374 CDD:238103
KASH 13484..13540 CDD:287506
Gas2l3XP_001056437.2 CH_SF 46..174 CDD:412120 26/134 (19%)
GAS2 215..283 CDD:396660 20/107 (19%)
PHA03247 <306..645 CDD:223021 76/406 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.