DRSC/TRiP Functional Genomics Resources

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Protein Alignment Msp300 and Syne3

DIOPT Version :9

Sequence 1:NP_001188695.1 Gene:Msp300 / 3771968 FlyBaseID:FBgn0261836 Length:13540 Species:Drosophila melanogaster
Sequence 2:NP_001036164.1 Gene:Syne3 / 212073 MGIID:2442408 Length:975 Species:Mus musculus


Alignment Length:1086 Identity:232/1086 - (21%)
Similarity:419/1086 - (38%) Gaps:254/1086 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly 11976 SVQETDFMMELIRVHGQVD----------YERLRKATERL-----EGLAGDLHNREQLIDELKGA 12025
            ||::....|::|:...||:          ..|||: ||::     ||:.        .::.:..|
Mouse    12 SVEDAQAWMKVIQEQLQVNDNTKGPRAALEARLRE-TEKICQLESEGMV--------KVELVLRA 67

  Fly 12026 AKPLIESCDVQIVEQIESAVQEAVVAWNDTSENLQQLRTRYQRAVELWDKYRNASAAVKNSIDQQ 12090
            |:.|:.:|......:|.:.:::....|.:|...:....:|.:.....|.:|..|........ |:
Mouse    68 AEALLATCQEGQKPEILARLRDIKSQWEETVTYMTHCHSRIEWVWLHWSEYLLAQDEFYRWF-QK 131

  Fly 12091 MDAVKSLEQPLD----------ALQHAKVCQDNLTTQN---DRIL-ELRDIVAKIA-ADVGLDAS 12140
            |  |.:||.|::          .|.||:|...|:..|.   ||:| |...:.::|. ..|..||.
Mouse   132 M--VVALEPPVELQLGLKEKQWQLSHAQVLLHNVDNQAVLLDRLLEEAGSLFSRIGDPSVDEDAQ 194

  Fly 12141 ALMQGELDALGQRLAECKDAITTLANVAETQDKERKELDKEVTLAKAYFNNVQQDISREAPQNPK 12205
            ..|:.|.||:   .|..:..:..||.||:..::.|:::::.....||....|...:.|    |.|
Mouse   195 KRMKAEYDAV---KARAQRRVDLLAQVAQDHEQYREDVNEFQLWLKAVVEKVHSCLGR----NCK 252

  Fly 12206 -ESEEQLAALRAHLQTLARTEEQLRQLKERH----QNSEV--APSVASSDDD--GILEVL-ALWQ 12260
             .:|.:|:.|:...:...|.||.|::|:|:.    ||:..  |..::...::  |:||.| .||:
Mouse   253 LATELRLSTLQDIAKDFPRGEESLKRLEEQAVGVIQNTSPLGAEKISGELEEMRGVLEKLRVLWK 317

  Fly 12261 K-------IFQ---DTFQEYHRLSTRL------------------ARSQNSSEALRLWRQYLQHV 12297
            :       :.|   |..|:..:|...|                  .::....|.:..||.: ...
Mouse   318 EEEGRLRGLLQSRGDCEQQIQQLEAELGDFKKSLQRLAQEGLEPTVKTATEDELVAQWRLF-SGT 381

  Fly 12298 QSFLSCAIPEDYSSLREQQQLCAIHQNLLISQQSVLSETPLESELSEQYKAL----TNLHNETLS 12358
            ::.|:...|. ...|:.|.:......:|.....||::..       ::|:::    |.|||.|.:
Mouse   382 RAALASEEPR-VDRLQTQLKKLVTFPDLQSLSDSVVATI-------QEYQSMKGKNTRLHNATRA 438

  Fly 12359 RIMQRNGELERRVSGWNAYRQQL----AALLDWLRQREAERNALQLRYIHLKRVPHLKHRLDAMI 12419
            .:.||.......:..|.|..|:|    |:|.|             |..||            ..:
Mouse   439 ELWQRFQRPLNDLQLWKALAQRLLDITASLPD-------------LASIH------------TFL 478

  Fly 12420 QQLDQGEQQSKALQEQQQELARHCDDALATAMRMEQASIGQRISNLRAALKTWQGFLQRVTQ--- 12481
            .|::....:|..|:||            ...::::...:|......|||.     .|::||.   
Mouse   479 PQIEAALTESSRLKEQ------------LAMLQLKTDLLGSIFGQERAAT-----LLEQVTSSVR 526

  Fly 12482 ----LSESYEQRVNQLQ------QEFGAA-----QKLLDANS---------ESLPTQPAAIEQLL 12522
                |..|..||.::||      ::||.|     :||||..:         ..||.:...:.:|.
Mouse   527 DRDLLHNSLLQRKSKLQSLLVQHKDFGVAFDPLNRKLLDLQARIQAEKGLPRDLPGKQVQLLRLQ 591

  Fly 12523 GSLRAQRVQLGAQVSALESLTVTQEELKECISPHDMKTIRQRNWLLWQQHADLDYQLANLINSIE 12587
            | |:.:.:.||.|:.|:..|....       |.|..|.    :.:...|.| |...|.:|::..:
Mouse   592 G-LQEEGLDLGTQIEAVRPLAHGN-------SKHQQKV----DQISCDQQA-LQRSLEDLVDRCQ 643

  Fly 12588 ERLSLLSNYQIRYDRISQWLQRLEQRVEKDADVTAMTNPEQAAKQLEQQVNSELQLRDKE-REWL 12651
            :.:.....:..|...:..|:....|.:|.......:.:.|.....||..::   ::.:|| :..|
Mouse   644 QNVREHCTFSHRLSELQLWITMATQTLESHQGDVRLWDAESQEAGLETLLS---EIPEKEVQVSL 705

  Fly 12652 LSTSRELLTLYSEPEVRSQVQQQSDSLIDRWQRLKYLAKQKATKIGELKMTLLRLEERIALIRAW 12716
            |....:|:...|.||..:.||::...|::.||.|:.|.        |..::|:|.::        
Mouse   706 LQALGQLVMKKSSPEGATMVQEELRKLMESWQALRLLE--------ENMLSLMRNQQ-------- 754

  Fly 12717 LFEVESQLDKPLNFESYTPNVIEAKLKEHEQIQRSIEHHSSNVGEVLNLVE---MLLNDADSWRT 12778
            |...|....|.   :.:|.|:.:|....:.|.......|.:|..|..:|.|   .||.|.:.| .
Mouse   755 LQRTEVDTGKK---QVFTNNIPKAGFLINPQDPIPRRQHGANPLEGHDLPEDHPQLLRDFEQW-L 815

  Fly 12779 QVNTSGL-------AASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQES 12836
            |...|.|       .|:|::|  |.:.|..|  |.:|||....:|.:.|::|..           
Mouse   816 QAENSKLRRIITMRVATAKDL--RTREVKLQ--ELEARIPEGQHLFENLLRLRP----------- 865

  Fly 12837 QIAGFERDQKSHSKHKLEERQMELRAKLEE-----LESQSVNLRQLEQIYAKLAMSAGVEPENIQ 12896
                 .|| .|:....|..|.|..::||::     .||....|...::...:...|.....:...
Mouse   866 -----ARD-PSNELEDLRYRWMLYKSKLKDSGHLLTESSPGELTAFQKSRRQKRWSPCSLLQKAC 924

  Fly 12897 KLTLPTKVMVSMWRQL--------TPRCHALLDAIDKDAKLMREFN 12934
            ::.||.::::.::..|        ..|..||.:...:...||..:|
Mouse   925 RVALPLQLLLLLFLLLLFLLPAGEEERSCALANNFARSFALMLRYN 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Msp300NP_001188695.1 SPEC 17..220 CDD:238103
SPEC 9546..9732 CDD:295325
sbcc 11187..12008 CDD:129705 12/46 (26%)
SMC_prok_B 11614..12442 CDD:274008 116/541 (21%)
SPEC 11994..12156 CDD:295325 42/191 (22%)
SPEC 12374..12564 CDD:295325 48/220 (22%)
Lipase_chap 12376..12529 CDD:281297 39/183 (21%)
SPEC 12703..12923 CDD:238103 52/242 (21%)
SPEC 12816..13032 CDD:295325 24/132 (18%)
SPEC 13196..13374 CDD:238103
KASH 13484..13540 CDD:287506
Syne3NP_001036164.1 SPEC 157..323 CDD:413338 45/172 (26%)
Spectrin 1 220..325 25/108 (23%)
SMC_prok_B <296..>548 CDD:274008 57/302 (19%)
SPEC 572..742 CDD:413338 39/185 (21%)
Spectrin 2 647..740 20/95 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 778..798 4/19 (21%)
KASH <946..975 CDD:402255 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47535
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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