DRSC/TRiP Functional Genomics Resources

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Protein Alignment Msp300 and syne3

DIOPT Version :9

Sequence 1:NP_001188695.1 Gene:Msp300 / 3771968 FlyBaseID:FBgn0261836 Length:13540 Species:Drosophila melanogaster
Sequence 2:NP_001076483.2 Gene:syne3 / 100009645 ZFINID:ZDB-GENE-070209-271 Length:1100 Species:Danio rerio


Alignment Length:1408 Identity:296/1408 - (21%)
Similarity:509/1408 - (36%) Gaps:442/1408 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly 12266 TFQEYHRLSTRLARSQNSSEALRLWRQYLQH----------VQSFLSCAIPEDYSSLREQQQLCA 12320
            |.||.|..       :.|.|..|.|.|.:|.          .:|.|..       .|||.:::.:
Zfish     2 TQQEQHEF-------RESLEEARSWMQAIQERLKQNDDTKGPRSALEV-------RLRETEKIHS 52

  Fly 12321 IHQNLLISQQSVL--SETPL---ESELSEQ----YKALTNLHNETLSRIMQRNGELERRVSGWNA 12376
            :..:..:....||  ||..|   :.||..|    .|.|...:::||:.|:..:..:|     |  
Zfish    53 LEPDGQVKMDRVLVASEALLRNGDEELKNQTHCKLKDLKAFYDDTLTYIIHCHSRIE-----W-- 110

  Fly 12377 YRQQLAALLDWLRQREA-ERNALQLRYIHLKRVPHLKHR--LDAMIQQLDQGEQQSKALQEQQQE 12438
                  ..|.|....:| |...|.|..:|....|.|:.:  |...:.|:|........:|.|.|.
Zfish   111 ------VWLHWSEYLKAHEEFGLWLEKMHRSLEPLLEMQLGLQEKLWQVDHLRVLHSDIQGQAQF 169

  Fly 12439 LARHCDDALATAMRMEQASIGQRISNLRAALKTWQGFLQRVTQLSESYEQRVNQLQQEFGAAQKL 12503
            |.|..|:|.|...|....|:.:         :|.||       |.|:|....::.|:....|||:
Zfish   170 LERLLDEAAALFNRTGDPSVDE---------QTQQG-------LQEAYNHIRDRAQERLTLAQKI 218

  Fly 12504 -----------------LDANSESLPTQPAAIEQLLGSLRAQRVQLGAQVSALESLTVTQ-EELK 12550
                             |.:.:|.:.......:.....|:|.: .|||.: |.|.||:.. |:|.
Zfish   219 AEEHQQYQSCVHKFQSWLVSKTEEVSRFSDVDDSTQNRLKALQ-DLGASI-AKEELTLQHIEKLS 281

  Fly 12551 ECI----SPHDMKTIRQ---RNWLLWQQHADLDYQLANLINSIEERLSLLSNYQIRYDRISQWLQ 12608
            |.:    ||...:.|.|   ...|.||       :|...:..::|.|      ||..|..:::.:
Zfish   282 EAVKANTSPAGAEKITQEIEELRLAWQ-------RLRQTLLELKEEL------QISLDSENEYSE 333

  Fly 12609 RLEQRVEKDADVTAMTNPEQAAKQLEQQVNSELQLRDKEREWLLSTSRELLTLYSEPEVRSQVQQ 12673
            |.:   |..||:..:       :.|.|:::.:|:.||.||                         
Zfish   334 RCK---ELWADLAKL-------RTLVQKLSGDLESRDGER------------------------- 363

  Fly 12674 QSDSLIDRWQ-----RLKYLAKQKATKIGELKMTLLRLEERIALIRAWLFEVESQLDKPLNFESY 12733
            ..:.::.:|:     |.|.:|::.:  :.|||.   ||:|        ||..      |.:.:|.
Zfish   364 TEEHMVAQWKMHTGVRNKLIAQEPS--VEELKS---RLKE--------LFRF------PQDSKSL 409

  Fly 12734 TPNVIEAKLKEHEQIQ-RSIEHHSSNVGEVLNLVEMLLNDADSWRTQVNT-----------SGLA 12786
            :..|: |.:||::.:: ||....|.:...:..:::..|:....|...|:.           |.:|
Zfish   410 SDEVL-AVVKEYQSVKGRSFRLSSESETALRQILQDPLHGFSQWSQLVSQVLEASSDVTEFSHIA 473

  Fly 12787 ASAQNLEQRWKNVCSQSAERKARILTIWNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSKH 12851
            ...||:|:..||    |.:.:.|:    :|||....|.           |.:.|           
Zfish   474 LLVQNIEKLLKN----SVQLQERL----SLLQVKSDLL-----------SAVFG----------- 508

  Fly 12852 KLEERQMELRAKLEELESQSVNLRQLEQIYAKLAMSAGVEPENIQKLTLPTKVMVSMWRQLTPRC 12916
              :|:..:|..:|      |.::|:.|.:::                            ||..|.
Zfish   509 --QEKAEDLLGEL------SGDMRKRELLHS----------------------------QLQQRK 537

  Fly 12917 HALLDAIDKDAKLMREFNNAQLEATNSLNAIQKALEQLPSAENQQTSKAEPKAVLQRLESLEKKL 12981
            :.|...|.|    .::|:||.......|::|:   :|..|.:..|......|:...:|..:.|.|
Zfish   538 NRLQGLISK----TKDFSNAYDSIHTKLSSIK---DQFVSTDGLQPDILAKKSQADQLRVIRKDL 595

  Fly 12982 QDAQQHVQQADNLAQEAKT-RTKQQPQLKQLLELVSAYTTLWQTVQTRI---------------- 13029
            ::.:.|:...:.|.....| |||.:       .|.:.:..|::.::.::                
Zfish   596 EECEAHIIALETLVSSNPTNRTKFE-------RLYADWRLLYKALRMKVNESEENIGEHESFHEN 653

  Fly 13030 VTLKTTWLTRAAQAAASLPVSEAANAAVQVNTLSQRKLRQAQQMQRETSITAKDAYIMELQTAIT 13094
            :.....||....|...|...||...:.......::|.|.:..:              .|||...|
Zfish   654 ILNMEKWLMIMKQKLDSFRGSEGEWSIDNRQHEAERALGEFPE--------------KELQLHQT 704

  Fly 13095 ECQNNLDELQRTVVDKTRKPGPQKIAKLLGNAQSSTELVKHLS---HLLLTECKADDQAAE---- 13152
            |.|.:      ||:.||.:.|...|.:.|...:.|...:..||   :.||...:..|:.|:    
Zfish   705 EAQGH------TVLAKTSEEGKVHILQDLKRLRESWMSLHTLSLNLYRLLQTTEFQDRWADGHQQ 763

  Fly 13153 ------------VDTVAELTLRF-----DTLQSQWKARQQHDQN---ASEVGRLTCPLCTQRNWQ 13197
                        .|...:..|||     .|...:.:...:.||:   |..:|.:..|.       
Zfish   764 GLSSDFEEGFITGDKRPDPLLRFHHEAESTGLQELERSTEADQDLIPAIVLGSIPSPR------- 821

  Fly 13198 QIDNDLWRLEQWLQFAESTQKAQSAPPSNIELLEDVTQDHREFLLDLESHKSIISSLNVVGD--- 13259
              |:::||.|:.: ..:|......|..|.:    :.|.:.::..::::....::.|....||   
Zfish   822 --DSEVWRRERSV-LDQSLDDEVDAVTSGV----NRTVNRKKMQMEMKGGGDLVGSAGWTGDWVT 879

  Fly 13260 -HLATHTLD---------TE----KARQLRSRLEADNERWNNVCINATKWQGLLQTALMGNSEFH 13310
             |:.:..:|         ||    :.|...|::..|:        ..|..||..:.|   ::|..
Zfish   880 EHMTSSGIDELDMHGRYETEPEVAQKRMKPSQIRHDD--------TLTGSQGPRRPA---DTEAQ 933

  Fly 13311 QTIGELVEWLQRTEQNIKASEPVDLTEERSV----LETKFKKFKDLRAELERCEPRVVSLQDAAD 13371
            ::  :...||.:  ||.|.:.  .|:.:||:    |..:....|||||.:...:.:...|.:  |
Zfish   934 RS--QFEAWLHK--QNDKLTG--ILSNQRSLSAKELRIRQNTLKDLRAGVVWGQSQFQKLLE--D 990

  Fly 13372 QLLRSVEGSEQQSQHTYERTLSRLTDLRLRLQSLRRLSGIYIVKLGAVLGYEGDNLGVPLHMLSS 13436
            |..||||..|             |.:||.|..                                 
Zfish   991 QQHRSVEDME-------------LEELRYRWM--------------------------------- 1009

  Fly 13437 ELLDNTTLSTSSMQAAAPNTENANNTDGGDAVDGDV---INTTVLARGARFLGRVARASLPIQAL 13498
                   |..|.::.||         |..::|.|.:   :.:...:.|..||.||.|.:||:|.|
Zfish  1010 -------LYKSKLKEAA---------DLKESVGGQIQEHVRSGKASSGPGFLYRVCRVALPLQLL 1058

  Fly 13499 MLLLLGVATLVPHGEDYT-CMFSNTFARSLEPMLSYPHGPPPT 13540
            :|.||.:|.|:|..::.| |..:|.||||...||.| .|||||
Zfish  1059 LLALLLLAFLLPMMDEGTSCSLANNFARSFNIMLRY-DGPPPT 1100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Msp300NP_001188695.1 SPEC 17..220 CDD:238103
SPEC 9546..9732 CDD:295325
sbcc 11187..12008 CDD:129705
SMC_prok_B 11614..12442 CDD:274008 46/197 (23%)
SPEC 11994..12156 CDD:295325
SPEC 12374..12564 CDD:295325 51/217 (24%)
Lipase_chap 12376..12529 CDD:281297 36/172 (21%)
SPEC 12703..12923 CDD:238103 42/231 (18%)
SPEC 12816..13032 CDD:295325 38/232 (16%)
SPEC 13196..13374 CDD:238103 40/198 (20%)
KASH 13484..13540 CDD:287506 28/56 (50%)
syne3NP_001076483.2 SPEC 114..322 CDD:295325 55/238 (23%)
KASH <1070..1100 CDD:287506 14/30 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24207
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47535
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.000

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