DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment waw and Dgp-1

DIOPT Version :9

Sequence 1:NP_001027089.1 Gene:waw / 3771960 FlyBaseID:FBgn0024182 Length:696 Species:Drosophila melanogaster
Sequence 2:NP_611302.1 Gene:Dgp-1 / 37080 FlyBaseID:FBgn0027836 Length:669 Species:Drosophila melanogaster


Alignment Length:562 Identity:122/562 - (21%)
Similarity:195/562 - (34%) Gaps:193/562 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NVNSAMIRAISIRWLLQRPGDKRHSAWLVARSKSLLVRNLSTTNQVKGETEEPSQADLLREFAHM 94
            |:::.:::      |.:|..:|..||..:.|      :::.||                 :|..:
  Fly   109 NIDADVVK------LRERRAEKGQSAQFLIR------KHIDTT-----------------DFMEI 144

  Fly    95 PVERIRNFSIIAHVDHGKSTLADRLLELTGAIARNGGQH--QVLDNLQVERERGITVKAQTASIF 157
            .|      :::.:||.|||||   |..||.....||..|  |.|...:.|.|.|     :|:|:.
  Fly   145 RV------AVVGNVDAGKSTL---LGVLTHGELDNGRGHARQRLFRHKHEIESG-----RTSSVG 195

  Fly   158 HRHKGQLYLLNLIDTP--GHVDFSNEVSRS--------LA----------------ACDGVVLLV 196
            :...|...:.|:::.|  ||:|:......|        ||                |.|..:|::
  Fly   196 NDILGFDGVGNVVNKPDHGHLDWVKICENSAKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMI 260

  Fly   197 DACHGVQAQTVANYHLAKQRQLAVVPVLNKIDIKHANPDQVCQDLKLLFGIDPDEVLRVSAKLGT 261
            .|..|:...|..:..||....:.|..|:.|||:..||..|  :::||||     ::|:       
  Fly   261 GANAGIIGMTKEHLGLALALAVPVFVVVTKIDMCPANVLQ--ENMKLLF-----KMLK------- 311

  Fly   262 GVSEVLERVIETVPPPQVQRDSDFRALIFDSWFDKYRGALNLI-----------YVLNGKLEQNQ 315
              |:...:|      |.|.|..|          |....|.|.:           .|....||..:
  Fly   312 --SQGCRKV------PVVVRSHD----------DVVLSATNFVSERLCPIFQVSNVTGDNLELLK 358

  Fly   316 DIQSLATKKVYSVKSISVLRPAECPVPDVSA--------------GQVGLIACNMR-----NSKE 361
            ...:|.:.::...:|:    |||..:.||.|              |.:.|..|.|.     .|..
  Fly   359 MFLNLLSTRMPGSESL----PAEFQIDDVYAVPGVGTVVSGTCLQGTIRLNDCLMLGPDAVGSFV 419

  Fly   362 SIVGDTIHLKNQAVAAAGSYRPQQPLVFAGVFPADQSKHVALRSAIDKMVLNDSAVTVKIDSSPA 426
            .|...:||.|...||.          |..|     |:...||:. |.:..|....|.|..|..|.
  Fly   420 PITIKSIHRKRMNVAR----------VRCG-----QTASFALKK-IKRAYLRKGMVMVSQDLKPQ 468

  Fly   427 LGQGWRLGFLG-----------------------------LLHMEVFCQRL-EQEHGAEPIITAP 461
              ..|.  |.|                             ::||...|.|. ::.|.....|..|
  Fly   469 --ACWE--FEGEILVLHHPTTISARYQAMVHCGSIRQTASIIHMSRDCLRTGDKAHVKFRFIKQP 529

  Fly   462 SVTYRLVLSNPKMIKQQGRDTMDISNAALFPEPHSIKEYYEP 503
                ..:.:..:::.::|| |..:.| .|.|.|::....|.|
  Fly   530 ----EYIRAGQRLVFREGR-TKAVGN-ILRPLPNAAASPYRP 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wawNP_001027089.1 PRK05433 94..695 CDD:235462 112/498 (22%)
LepA 100..277 CDD:206677 52/204 (25%)
EF4_II 285..370 CDD:293900 21/114 (18%)
EF4_III 386..461 CDD:293917 20/104 (19%)
lepA_C 502..581 CDD:239680 1/2 (50%)
LepA_C 589..695 CDD:283959
Dgp-1NP_611302.1 GTPBP1 38..555 CDD:227583 118/550 (21%)
GTPBP1_like 145..367 CDD:206728 64/267 (24%)
GTPBP_II 376..462 CDD:293895 24/101 (24%)
GTPBP_III 468..553 CDD:294007 14/94 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464687
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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