DRSC/TRiP Functional Genomics Resources

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Protein Alignment cana and AT4G38950

DIOPT Version :9

Sequence 1:NP_001027247.1 Gene:cana / 3771934 FlyBaseID:FBgn0040233 Length:1931 Species:Drosophila melanogaster
Sequence 2:NP_001119143.1 Gene:AT4G38950 / 830050 AraportID:AT4G38950 Length:836 Species:Arabidopsis thaliana


Alignment Length:873 Identity:209/873 - (23%)
Similarity:348/873 - (39%) Gaps:229/873 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSTKNASSIQVCIKVRP---------------CEPGLTSLWQ--VKEGRSIQLADSHAEPYVFDY 48
            |.......|.|.:::||               |....|.|::  ::||.:...|      |.||.
plant     6 MPVAREEKILVLVRLRPLNQKEIAANEAADWECINDTTILYRNTLREGSNFPSA------YSFDK 64

  Fly    49 VFDEGASNQEVFDRMAKHIVHACMQGSNGTIFAYGQTSSGKTYTMMGDEQNPGVMVLAAKEIFQQ 113
            |:......::|::...|.|..:.::|.|.:|||||||||||||||      .|:...|..:||..
plant    65 VYRGECPTRQVYEDGTKEIALSVVKGINCSIFAYGQTSSGKTYTM------TGITEFAVADIFDY 123

  Fly   114 ISSETERDFLLRVGYIEIYNEKIYDLLNKKNQDLKIHES-GNGIVNVNCKESIVTSEDDLLRQLY 177
            |....||.|.::...||||||.|.|||:.....|::.:. ..|.|.....|..:...:.|...|.
plant   124 IFQHEERAFSVKFSAIEIYNEAIRDLLSSDGTSLRLRDDPEKGTVVEKATEETLRDWNHLKELLS 188

  Fly   178 MGNKERVVGETNMNERSSRSHAIFRIIIES--RKSDHSDNDTVKQSVLSLVDLAGSEQVDPADHA 240
            :...:|.:|||::||||||||.:.|:.:||  |:....:|.|...:.::.:||||||:...|..|
plant   189 ICEAQRKIGETSLNERSSRSHQMIRLTVESSAREFLGKENSTTLMASVNFIDLAGSERASQAMSA 253

  Fly   241 S-----------SLMIFRNLVKSLSESVDSKPNSFRDSKLPRIMLPSLGGNVLTSIICTITP--S 292
            .           ||:....:::.||:......| ||||||.||:.|.||||..|:||||::|  |
plant   254 GTRLKEGCHINRSLLTLGTVIRKLSKGRQGHIN-FRDSKLTRILQPCLGGNARTAIICTLSPARS 317

  Fly   293 FVEESSSTISFGTCAKKIRCKPQVCKIDSETTMMRQLDRGISMLKDKL---AKKKIKN------- 347
            .||.:.:|:.|..|||::..|.::..:.|:..:::||.|.::.|:.:|   |.....|       
plant   318 HVELTKNTLLFACCAKEVTTKARINVVMSDKALLKQLQRELARLETELRNPASSPASNCDCAMTV 382

  Fly   348 -ESQLVLQELEGRI-----KRDMLKIVSSASLDDYRLQKRRRTWTLTAS---GSEGDAPVLALPE 403
             :..|.:|::|..|     :||:    :.:.|:|:.........:...:   |:..|       :
plant   383 RKKDLQIQKMEKEIAELRKQRDL----AQSRLEDFMRMIEHNVASKPGTPHFGNHTD-------K 436

  Fly   404 PEESRLPRPSKLTNLPKPLFQRRGIAPKAKGICKTLKEKRLQTDNMD-TMPGRAKQLGRETASRI 467
            .|:..:...|.:.:..:..|...|::... .|.:.........|::| .:|.|::.|..|....:
plant   437 WEDGSVSETSGVVDSDRRSFISDGMSTPL-SISRAYVHSHSDDDDLDEDLPRRSEDLSEEYCREV 500

  Fly   468 P--------SVMMSKKYQESVPNCDAPQTEISALTASNQVAKETIEKYEEQVKRLKETIERLEME 524
            .        :|..:||.:.:.|.        :.|........||......:|:    :..|.|..
plant   501 QCIETEESVTVYNNKKDKRAEPE--------NVLGCGEDANGETSVSQNVRVR----SWNRRETV 553

  Fly   525 NGKAV---NLGEQF----ETHKAKSKQMEEELLSSISEKDSTIVSLQQSLEELSRDVLRNSKEDQ 582
            :|.:.   |:|..|    |:||.....:  |..|::|..||                        
plant   554 SGPSTPPENIGTGFLGRPESHKIAFPDL--EFGSTVSRNDS------------------------ 592

  Fly   583 MRSMCPELESSCERICNKCLELERLLPLASASGLDSVACQFDQLRSEIAATRMKLESMLSTFSHA 647
             .|.|....:..:.|         ..||....|:.|:                      .||...
plant   593 -MSSCGSDSTGTQSI---------RTPLGEEGGITSI----------------------RTFVEG 625

  Fly   648 SCEVSQKTTDCKRLSEQISTAHDDFGQLQEKYNNLKHKWSSQKLAIDTMQVDYNTIQQKYLQL-- 710
            ..|::      ||..| :|.| :|.|:::            :.:.:|:|..::...:|:.|:|  
plant   626 LKEMA------KRQGE-VSNA-EDSGKMR------------RDIGLDSMDREFERQRQEILELWQ 670

  Fly   711 -------QDEYRHLELRSDE--------QCQQL-------QDENSKLQ-AEIGTLKERVEEIHSE 752
                   ...|.:|..:.||        :.::|       ...|..|: .|..||....:|:|.|
plant   671 TCNISLVHRTYFYLLFKGDEADSIYIGVELRRLLFMKDSFSQGNQALEGGETLTLASSRKELHRE 735

  Fly   753 LLEVPNPDTHPEDMELQNQELKKRLSKL 780
                                 :|.||||
plant   736 ---------------------RKMLSKL 742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
canaNP_001027247.1 KISc 8..316 CDD:214526 117/340 (34%)
Motor_domain 8..310 CDD:277568 116/334 (35%)
SMC_prok_B <471..1270 CDD:274008 61/342 (18%)
Mplasa_alph_rch 924..1647 CDD:275316
CENP-H 1204..>1266 CDD:283493
CALCOCO1 <1489..1850 CDD:285171
AT4G38950NP_001119143.1 KISc_CENP_E 13..335 CDD:276825 116/334 (35%)
DUF4175 <349..>419 CDD:372724 15/73 (21%)
DUF3490 658..816 CDD:371840 21/106 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0242
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47968
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.960

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