DRSC/TRiP Functional Genomics Resources

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Protein Alignment cana and Khc

DIOPT Version :9

Sequence 1:NP_001027247.1 Gene:cana / 3771934 FlyBaseID:FBgn0040233 Length:1931 Species:Drosophila melanogaster
Sequence 2:NP_476590.1 Gene:Khc / 36810 FlyBaseID:FBgn0001308 Length:975 Species:Drosophila melanogaster


Alignment Length:1154 Identity:283/1154 - (24%)
Similarity:490/1154 - (42%) Gaps:278/1154 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SIQVCIKVRP---CEPGLTSLWQVK-----EGRSIQLADSHAEPYVFDYVFDEGASNQEVFDRMA 64
            ||:|..:.||   .|....|.:.||     |...|.:|   .:.|:||.||...||.::|::..|
  Fly    12 SIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---GKVYLFDKVFKPNASQEKVYNEAA 73

  Fly    65 KHIVHACMQGSNGTIFAYGQTSSGKTYTM---MGDEQNPGVMVLAAKEIFQQI-SSETERDFLLR 125
            |.||...:.|.|||||||||||||||:||   :||....|::.....:||..| :.|...:|.::
  Fly    74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIK 138

  Fly   126 VGYIEIYNEKIYDLLNKKNQDLKIHESGNGIVNV-NCKESIVTSEDDLLRQLYMGNKERVVGETN 189
            |.|.|||.:||.|||:....:|.:||..|.:..| ...|..|:|.:|:...:..|...|.:..||
  Fly   139 VSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTN 203

  Fly   190 MNERSSRSHAIFRIIIESRKSDHSDNDTVKQSVLSLVDLAGSEQVDPA-------DHA----SSL 243
            |||.|||||::|.|.:   |.::.:|.......|.||||||||:|...       |.|    .||
  Fly   204 MNEHSSRSHSVFLINV---KQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 265

  Fly   244 MIFRNLVKSLSESVDSKPN-SFRDSKLPRIMLPSLGGNVLTSI-ICTITPSFVE-ESSSTISFGT 305
            ....|::.:|::.  :|.: .:|||||.||:..|||||..|:| ||....||.| |:.||:.||.
  Fly   266 SALGNVISALADG--NKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGR 328

  Fly   306 CAKKIRCKPQVCKIDSETTMMRQLDRGISMLKDKLAKKKIKNESQLVLQELEGRIKR----DMLK 366
            .||.:  |..|| ::.|.| ..:..|.....|:|.|:.|.|      :::||..:.|    :.:|
  Fly   329 RAKTV--KNVVC-VNEELT-AEEWKRRYEKEKEKNARLKGK------VEKLEIELARWRAGETVK 383

  Fly   367 IVSSASLDDYRLQKRRRTWTLTASGSEGDAPVLALPEPEESRLPRPSKLTNLPKPLF--QRRGIA 429
            .....:::|          .:.||....:.........|.:...:.:.|.|:...:.  ::..:|
  Fly   384 AEEQINMED----------LMEASTPNLEVEAAQTAAAEAALAAQRTALANMSASVAVNEQARLA 438

  Fly   430 PKAKGICKTLKEKRLQTDNMDTMPGRAKQLGRETASRIPSVMMSKKYQESVPNCDAPQTEISALT 494
            .:.:.:.:.|.:|   .:.::.....|:||..:...:...:..:::..|::      |:|::.:.
  Fly   439 TECERLYQQLDDK---DEEINQQSQYAEQLKEQVMEQEELIANARREYETL------QSEMARIQ 494

  Fly   495 ASNQVAKETIEKYEEQVKRLKETIERLEMENGKAVNLGEQFETHKAKSKQMEEELLSSISEKDST 559
            ..|:.||       |:||.:.:.:|.|      |||..::.:....|:|.: :.|...:.:|.|.
  Fly   495 QENESAK-------EEVKEVLQALEEL------AVNYDQKSQEIDNKNKDI-DALNEELQQKQSV 545

  Fly   560 IVSLQQSLEELSRDVLRNSKEDQMRSMCPELESSCERICNKCLELERLL---PLASASGLDSVAC 621
            ..:....|::| :|:..:.|               :||......|.|.|   ..|.|.|..|:  
  Fly   546 FNAASTELQQL-KDMSSHQK---------------KRITEMLTNLLRDLGEVGQAIAPGESSI-- 592

  Fly   622 QFDQLRSEIAAT-RMKLESMLSTFSHASCEVSQKTTDCKRLSEQISTAHDDFGQLQEKYNNLKHK 685
              |...|.:|.| ..|:|   ..|:.|...:|:..|:.|.::::.|.                  
  Fly   593 --DLKMSALAGTDASKVE---EDFTMARLFISKMKTEAKNIAQRCSN------------------ 634

  Fly   686 WSSQKLAIDTMQVDYNTIQQKYLQLQDEYRHLELRSDEQCQQLQDENSKLQAEIGTLKERVEEIH 750
                   ::|.|.|.|....:|.:...|||.|..:.:.:.:.||:...:.:.:..||:|:::.:.
  Fly   635 -------METQQADSNKKISEYEKDLGEYRLLISQHEARMKSLQESMREAENKKRTLEEQIDSLR 692

  Fly   751 SELLEVPNPDTHPEDMELQNQELKKRLSKLQWEFDEIQLNYECLSNELMSTIQECDALREEHKQR 815
            .|..::    ...|.:...|.|.|:|..:|:..||                 .:.|.|||.|.::
  Fly   693 EECAKL----KAAEHVSAVNAEEKQRAEELRSMFD-----------------SQMDELREAHTRQ 736

  Fly   816 TTNSDLESMKSSGVGTECSDPENELDTDLLQQFTKLSKSIQQIELTDYSGGRRLFIYNHAEQDQS 880
            .  |:|..        |.:..::|:| ::.....||..:.||: ..||...|             
  Fly   737 V--SELRD--------EIAAKQHEMD-EMKDVHQKLLLAHQQM-TADYEKVR------------- 776

  Fly   881 VPSLKLCLEPAKYLEGDGKQHDASDSVFLKGFLKCQRFQIVKINQEQNLVKEEDRMRDIIFQLKQ 945
                               |.||.                 |.::.||::...:|..    |.::
  Fly   777 -------------------QEDAE-----------------KSSELQNIILTNERRE----QARK 801

  Fly   946 EVDGKKNLIEEEKEVINNLRAQITSLNQIETIKNQNAKTKILCEELQTKDTVQTANKQ------- 1003
            ::.|.::.:.:|.:.::|||                   |:..::||.:......|::       
  Fly   802 DLKGLEDTVAKELQTLHNLR-------------------KLFVQDLQQRIRKNVVNEESEEDGGS 847

  Fly  1004 --ESQEVLTLKTSLAHLKSKV------------CELQKKLEK--QSEDEKISELQSDIGEISECC 1052
              :.|::..|:.:|..| :||            ||| .||||  :...|::..|::.:.|..|..
  Fly   848 LAQKQKISFLENNLDQL-TKVHKQLVRDNADLRCEL-PKLEKRLRCTMERVKALETALKEAKEGA 910

  Fly  1053 LSMELKLADIVNWQAEELRPLDQLQESGVELQHHSTTAEESLNVEKPIQ 1101
                  :.|...:|.|    :|:::|: |..:|......:: .:.|||:
  Fly   911 ------MRDRKRYQYE----VDRIKEA-VRQKHLGRRGPQA-QIAKPIR 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
canaNP_001027247.1 KISc 8..316 CDD:214526 129/334 (39%)
Motor_domain 8..310 CDD:277568 128/328 (39%)
SMC_prok_B <471..1270 CDD:274008 128/658 (19%)
Mplasa_alph_rch 924..1647 CDD:275316 40/201 (20%)
CENP-H 1204..>1266 CDD:283493
CALCOCO1 <1489..1850 CDD:285171
KhcNP_476590.1 KISc_KHC_KIF5 10..333 CDD:276820 128/328 (39%)
KISc 12..340 CDD:214526 131/338 (39%)
Apolipoprotein 595..744 CDD:279749 41/207 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437992
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000669
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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